JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OXR1_chr8_106265190_106757694	0/0	c0006	2622	1	0	1	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	c0007	2622	1	0	1	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	c0008	2622	1	0	1	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	c0009	2622	1	1	0	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXR1_chr8_106265190_106757694	0/0	c0010	2622	1	1	0	0	0	0	copy fasta	OXR1	chr8	106265190	106757694
OXSM_chr3_25785090_25799531	1/1	c0001	1380	342	66	69	150	12	43	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	c0002	1380	16	15	1	0	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	c0003	1380	12	12	0	0	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	c0004	1380	2	0	0	2	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	c0005	1380	2	2	0	0	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	c0006	1380	2	0	0	1	0	1	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	c0007	1392	1	0	0	1	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	c0008	1380	1	0	1	0	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	c0009	1380	1	0	0	1	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	c0010	1380	1	0	1	0	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	c0011	1380	1	1	0	0	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSM_chr3_25785090_25799531	0/0	c0012	1380	1	0	0	1	0	0	copy fasta	OXSM	chr3	25785090	25799531
OXSR1_chr3_38160537_38260484	1/1	c0001	1584	168	34	38	69	9	16	copy fasta	OXSR1	chr3	38160537	38260484
OXSR1_chr3_38160537_38260484	0/0	c0002	1584	80	40	16	19	1	4	copy fasta	OXSR1	chr3	38160537	38260484
OXTR_chr3_8745381_8774613	0/0	c0001	1170	217	18	22	147	8	22	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/1	c0002	1170	89	35	21	6	8	18	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	c0003	1170	77	5	23	44	0	5	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	1/0	c0004	1170	68	31	10	23	2	1	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	c0005	1170	5	0	0	5	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	c0006	1170	3	2	1	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	c0007	1170	3	0	3	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	c0008	1170	2	2	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	c0009	1170	2	2	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	c0010	1170	1	0	0	1	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	c0011	1170	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	c0012	1170	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	c0013	1170	1	0	0	1	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	c0014	1170	1	0	1	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	c0015	1170	1	0	0	1	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	c0016	1170	1	0	1	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXTR_chr3_8745381_8774613	0/0	c0017	1170	1	1	0	0	0	0	copy fasta	OXTR	chr3	8745381	8774613
OXT_chr20_3066620_3077517	1/1	c0001	378	461	95	82	218	18	46	copy fasta	OXT	chr20	3066620	3077517
OXT_chr20_3066620_3077517	0/0	c0002	378	1	1	0	0	0	0	copy fasta	OXT	chr20	3066620	3077517
P2RX1_chr17_3891592_3921465	1/1	c0001	1200	364	86	78	139	14	45	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	c0002	1200	3	3	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	c0003	1200	2	2	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	c0004	1200	2	0	0	2	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	c0005	1200	1	0	0	1	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	c0006	1200	1	1	0	0	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	c0007	1200	1	0	0	1	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	c0008	1200	1	0	0	1	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	c0009	1200	1	0	0	1	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	c0010	1200	1	0	0	1	0	0	copy fasta	P2RX1	chr17	3891592	3921465
P2RX1_chr17_3891592_3921465	0/0	c0011	1200	1	0	0	0	0	1	copy fasta	P2RX1	chr17	3891592	3921465
P2RX2_chr12_132613776_132627388	0/0	c0001	1416	271	70	49	111	13	28	copy fasta	P2RX2	chr12	132613776	132627388