JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
P2RX2_chr12_132613776_132627388	1/1	c0002	1416	98	20	24	30	3	19	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	c0003	1416	5	5	0	0	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	c0004	1416	2	2	0	0	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	c0005	1416	1	0	0	1	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	c0006	1416	1	0	0	1	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	c0007	1416	1	0	1	0	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	c0008	1416	1	1	0	0	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	c0009	1416	1	0	0	1	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	c0010	1416	1	0	0	1	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	c0011	1416	1	1	0	0	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	c0012	1416	1	0	0	1	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	c0013	1416	1	0	0	0	0	1	copy fasta	P2RX2	chr12	132613776	132627388
P2RX2_chr12_132613776_132627388	0/0	c0014	1405	1	1	0	0	0	0	copy fasta	P2RX2	chr12	132613776	132627388
P2RX3_chr11_57333352_57377396	1/0	c0001	1194	203	80	34	60	13	15	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	c0002	1194	113	6	20	66	4	17	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	c0003	1194	14	0	1	12	0	1	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/1	c0004	1194	10	0	7	0	1	1	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	c0005	1194	4	0	0	1	0	3	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	c0006	1194	3	3	0	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	c0007	1194	2	2	0	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	c0008	1194	1	1	0	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	c0009	1194	1	0	0	1	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	c0010	1194	1	1	0	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	c0011	1194	1	0	0	0	0	1	copy fasta	P2RX3	chr11	57333352	57377396
P2RX3_chr11_57333352_57377396	0/0	c0012	1194	1	1	0	0	0	0	copy fasta	P2RX3	chr11	57333352	57377396
P2RX4_chr12_121205129_121239106	1/1	c0001	1167	227	51	36	105	8	25	copy fasta	P2RX4	chr12	121205129	121239106
P2RX4_chr12_121205129_121239106	0/0	c0002	1167	70	10	19	30	2	9	copy fasta	P2RX4	chr12	121205129	121239106
P2RX4_chr12_121205129_121239106	0/0	c0003	1167	52	28	12	1	4	7	copy fasta	P2RX4	chr12	121205129	121239106
P2RX4_chr12_121205129_121239106	0/0	c0004	1167	28	0	0	23	0	5	copy fasta	P2RX4	chr12	121205129	121239106
P2RX4_chr12_121205129_121239106	0/0	c0005	1167	3	0	1	2	0	0	copy fasta	P2RX4	chr12	121205129	121239106
P2RX4_chr12_121205129_121239106	0/0	c0006	1167	3	0	1	0	2	0	copy fasta	P2RX4	chr12	121205129	121239106
P2RX4_chr12_121205129_121239106	0/0	c0007	1167	2	2	0	0	0	0	copy fasta	P2RX4	chr12	121205129	121239106
P2RX4_chr12_121205129_121239106	0/0	c0008	1167	1	0	1	0	0	0	copy fasta	P2RX4	chr12	121205129	121239106
P2RX4_chr12_121205129_121239106	0/0	c0009	1167	1	0	0	1	0	0	copy fasta	P2RX4	chr12	121205129	121239106
P2RX4_chr12_121205129_121239106	0/0	c0010	1167	1	1	0	0	0	0	copy fasta	P2RX4	chr12	121205129	121239106
P2RX5_chr17_3668227_3701155	0/1	c0001	1268	212	13	56	106	13	23	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	1/0	c0002	1269	139	68	16	32	3	19	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	c0003	1268	4	0	0	3	0	1	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	c0004	1269	2	0	2	0	0	0	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	c0005	1268	1	0	0	1	0	0	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	c0006	1268	1	1	0	0	0	0	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	c0007	1268	1	0	0	0	0	1	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	c0008	1269	1	1	0	0	0	0	copy fasta	P2RX5	chr17	3668227	3701155
P2RX5_chr17_3668227_3701155	0/0	c0009	1269	1	1	0	0	0	0	copy fasta	P2RX5	chr17	3668227	3701155
P2RX6_chr22_21010165_21033008	0/0	c0001	1326	256	62	37	128	9	20	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	1/0	c0002	1326	132	30	26	52	4	19	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/1	c0003	1326	26	1	13	6	1	4	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	c0004	1326	21	0	3	16	2	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	c0005	1326	8	0	1	7	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	c0006	1326	5	0	1	1	2	1	copy fasta	P2RX6	chr22	21010165	21033008