JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
P2RX6_chr22_21010165_21033008	0/0	c0007	1326	3	3	0	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	c0008	1326	1	0	1	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	c0009	1326	1	0	0	1	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	c0010	1326	1	0	0	0	0	1	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	c0011	1326	1	1	0	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	c0012	1326	1	0	0	1	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	c0013	1326	1	0	1	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	c0014	1326	1	1	0	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	c0015	1326	1	0	0	0	0	1	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	c0016	1326	1	0	1	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX7_chr12_121127876_121193032	0/1	c0001	1788	50	8	8	25	5	3	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0002	1788	41	19	4	16	1	1	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0003	1788	39	11	5	14	3	6	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0004	1788	39	2	7	29	0	1	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0005	1788	24	3	12	6	0	3	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0006	1788	19	5	4	8	1	1	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0007	1788	18	0	1	13	1	3	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0008	1788	16	4	3	7	0	2	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0009	1788	12	0	0	12	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0010	1788	10	0	4	6	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0011	1788	10	8	2	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0012	1788	8	3	2	2	0	1	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0013	1788	8	0	4	0	1	3	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	1/0	c0014	1788	8	0	1	4	2	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0015	1788	5	0	0	0	0	5	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0016	1788	5	5	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0017	1788	4	4	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0018	1788	4	4	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0019	1788	4	4	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0020	1788	4	4	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0021	1788	3	0	1	2	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0022	1788	3	3	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0023	1788	3	0	0	0	1	2	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0024	1788	2	1	1	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0025	1788	2	2	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0026	1788	2	0	0	0	0	2	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0027	1788	2	2	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0028	1788	2	0	0	0	0	2	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0029	1788	1	0	0	0	0	1	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0030	1788	1	0	0	1	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0031	1788	1	0	1	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0032	1788	1	0	1	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0033	1788	1	0	0	1	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0034	1788	1	1	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0035	1788	1	1	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0036	1788	1	1	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0037	1788	1	0	0	0	0	1	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0038	1788	1	1	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0039	1788	1	0	0	1	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0040	1788	1	0	0	0	1	0	copy fasta	P2RX7	chr12	121127876	121193032