JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
P2RX7_chr12_121127876_121193032	0/0	c0041	1788	1	0	0	1	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0042	1788	1	1	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0043	1788	1	1	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0044	1788	1	0	1	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0045	1788	1	0	0	1	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0046	1788	1	0	0	1	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	c0047	1788	1	0	0	0	0	1	copy fasta	P2RX7	chr12	121127876	121193032
P2RY10_chrX_78940391_78968727	1/1	c0001	1020	222	66	41	80	11	22	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	c0002	1020	93	5	13	67	0	8	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	c0003	1020	2	0	2	0	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	c0004	1020	1	0	1	0	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	c0005	1023	1	0	0	1	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	c0006	1020	1	1	0	0	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	c0007	1020	1	0	1	0	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	c0008	1031	1	0	0	1	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY11_chr19_10106693_10120372	0/0	c0001	1125	163	16	41	75	8	23	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	1/0	c0002	1125	160	62	25	57	7	8	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/1	c0003	1125	88	10	7	57	3	10	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0004	1125	10	0	0	7	0	3	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0005	1125	5	0	4	1	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0006	1125	3	0	3	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0007	1125	3	3	0	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0008	1125	3	0	0	3	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0009	1125	2	2	0	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0010	1125	2	0	2	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0011	1125	1	0	0	1	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0012	1125	1	0	0	0	0	1	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0013	1125	1	0	0	0	0	1	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0014	1125	1	1	0	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0015	1125	1	0	0	0	0	1	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0016	1125	1	1	0	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0017	1125	1	1	0	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0018	1125	1	0	0	1	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0019	1125	1	1	0	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0020	1125	1	1	0	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0021	1125	1	0	0	0	0	1	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0022	1125	1	0	1	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	c0023	1125	1	0	1	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY12_chr3_151331843_151389753	0/0	c0001	1029	260	57	45	117	7	34	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/1	c0002	1029	76	12	13	38	4	8	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	1/0	c0003	1029	39	1	5	23	7	2	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	c0004	1029	11	10	1	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	c0005	1029	6	6	0	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	c0006	1029	1	1	0	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	c0007	1029	1	0	0	1	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	c0008	1029	1	1	0	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	c0009	1029	1	0	0	1	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY13_chr3_151321312_151334549	0/1	c0001	1065	331	86	60	139	11	34	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	1/0	c0002	1065	62	6	9	37	7	2	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	c0003	1065	46	0	3	38	0	5	copy fasta	P2RY13	chr3	151321312	151334549