JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
P2RY13_chr3_151321312_151334549	0/0	c0004	1065	2	0	0	2	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	c0005	1065	1	0	0	0	0	1	copy fasta	P2RY13	chr3	151321312	151334549
P2RY14_chr3_151207117_151283542	1/1	c0001	1017	354	61	62	175	14	40	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	c0002	1017	33	27	1	1	0	4	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	c0003	1017	6	1	4	0	1	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	c0004	1017	3	0	0	3	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	c0005	1017	2	2	0	0	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	c0006	1017	1	1	0	0	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	c0007	1017	1	0	0	1	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	c0008	1017	1	0	0	0	1	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	c0009	1017	1	1	0	0	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	c0010	1017	1	0	1	0	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	c0011	1017	1	1	0	0	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY1_chr3_152830131_152846439	1/1	c0001	1122	186	20	49	83	7	25	copy fasta	P2RY1	chr3	152830131	152846439
P2RY1_chr3_152830131_152846439	0/0	c0002	1122	123	57	14	43	3	6	copy fasta	P2RY1	chr3	152830131	152846439
P2RY1_chr3_152830131_152846439	0/0	c0003	1122	47	19	7	15	0	6	copy fasta	P2RY1	chr3	152830131	152846439
P2RY1_chr3_152830131_152846439	0/0	c0004	1122	4	0	0	4	0	0	copy fasta	P2RY1	chr3	152830131	152846439
P2RY1_chr3_152830131_152846439	0/0	c0005	1122	2	2	0	0	0	0	copy fasta	P2RY1	chr3	152830131	152846439
P2RY1_chr3_152830131_152846439	0/0	c0006	1122	2	0	0	0	0	2	copy fasta	P2RY1	chr3	152830131	152846439
P2RY1_chr3_152830131_152846439	0/0	c0007	1122	1	0	0	1	0	0	copy fasta	P2RY1	chr3	152830131	152846439
P2RY1_chr3_152830131_152846439	0/0	c0008	1122	1	0	0	0	0	1	copy fasta	P2RY1	chr3	152830131	152846439
P2RY1_chr3_152830131_152846439	0/0	c0009	1122	1	0	0	1	0	0	copy fasta	P2RY1	chr3	152830131	152846439
P2RY1_chr3_152830131_152846439	0/0	c0010	1122	1	0	0	1	0	0	copy fasta	P2RY1	chr3	152830131	152846439
P2RY2_chr11_73213281_73247427	0/0	c0001	1134	129	23	26	51	8	21	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	c0002	1134	113	2	26	73	2	10	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	c0003	1134	60	49	8	1	0	2	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/1	c0004	1134	45	1	19	13	6	5	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	c0005	1134	21	7	2	8	2	2	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	1/0	c0006	1134	19	2	2	14	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	c0007	1134	8	8	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	c0008	1134	5	0	0	4	0	1	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	c0009	1134	4	0	2	0	0	2	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	c0010	1134	2	0	0	2	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	c0011	1134	2	0	1	0	0	1	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	c0012	1134	2	0	0	0	0	2	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	c0013	1134	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	c0014	1134	1	0	0	1	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	c0015	1134	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	c0016	1134	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	c0017	1134	1	0	0	1	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	c0018	1134	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY4_chrX_70253166_70265204	1/1	c0001	1098	178	14	50	82	11	19	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	c0002	1098	62	10	2	43	0	7	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	c0003	1098	48	17	5	20	1	5	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	c0004	1098	12	6	0	5	1	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	c0005	1098	11	11	0	0	0	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	c0006	1098	7	7	0	0	0	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	c0007	1098	3	3	0	0	0	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	c0008	1098	3	3	0	0	0	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	c0009	1098	2	0	0	0	0	2	copy fasta	P2RY4	chrX	70253166	70265204