JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
P2RY4_chrX_70253166_70265204	0/0	c0010	1098	1	1	0	0	0	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	c0011	1098	1	0	0	0	0	1	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	c0012	1095	1	0	0	1	0	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY6_chr11_73267338_73303625	1/1	c0001	987	299	80	57	104	17	39	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	c0002	987	10	0	0	9	0	1	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	c0003	987	6	6	0	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	c0004	987	3	3	0	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	c0005	987	2	2	0	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	c0006	987	1	0	0	1	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	c0007	987	1	1	0	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	c0008	987	1	0	1	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	c0009	987	1	0	0	0	1	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY8_chrX_1457581_1542185	1/0	c0001	1080	84	11	27	38	3	4	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	c0002	1080	9	4	4	0	0	1	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	c0003	1080	7	7	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	c0004	1080	4	4	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	c0005	1080	2	2	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	c0006	1086	1	0	0	0	0	1	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	c0007	1082	1	0	0	0	0	1	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	c0008	1081	1	1	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	c0009	1081	1	0	1	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	c0010	1080	1	0	0	0	0	1	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	c0011	1077	1	0	0	1	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	c0012	1086	1	0	0	1	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	c0013	1083	1	0	1	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P3H1_chr1_42741374_42772028	1/1	c0001	2211	329	74	51	154	12	36	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0002	2211	15	0	4	7	1	3	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0003	2211	8	4	2	0	0	2	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0004	2211	6	0	0	5	1	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0005	2211	5	2	3	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0006	2211	5	0	0	5	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0007	2211	5	5	0	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0008	2211	4	3	1	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0009	2211	3	0	0	3	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0010	2211	3	3	0	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0011	2211	3	0	0	3	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0012	2211	2	1	1	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0013	2211	2	0	0	0	0	2	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0014	2211	2	0	0	2	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0015	2211	1	0	0	1	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0016	2211	1	0	0	1	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0017	2211	1	0	0	1	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0018	2211	1	0	0	1	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0019	2211	1	0	1	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0020	2211	1	1	0	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0021	2211	1	0	1	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0022	2211	1	1	0	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0023	2211	1	1	0	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0024	2211	1	1	0	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0025	2211	1	0	0	1	0	0	copy fasta	P3H1	chr1	42741374	42772028