JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
P3H1_chr1_42741374_42772028	0/0	c0026	2211	1	0	0	0	0	1	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0027	2211	1	1	0	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	c0028	2211	1	1	0	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H2_chr3_189951728_190125897	1/1	c0001	2127	148	51	30	46	5	14	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0002	2127	96	16	15	53	3	9	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0003	2127	41	4	9	19	2	7	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0004	2127	3	3	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0005	2127	1	0	1	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0006	2127	1	0	0	1	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0007	2127	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0008	2127	1	0	0	0	0	1	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0009	2127	1	0	1	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0010	2127	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0011	2127	1	0	0	1	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0012	2127	1	0	0	0	0	1	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0013	2127	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0014	2127	1	0	0	1	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0015	2127	1	0	0	1	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0016	2127	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0017	2127	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0018	2127	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0019	2127	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	c0020	2127	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H3_chr12_6823407_6844847	0/0	c0001	2211	104	20	21	52	2	9	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/1	c0002	2211	103	18	21	56	3	4	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	1/0	c0003	2211	100	15	17	38	8	21	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0004	2211	27	6	1	19	1	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0005	2211	20	0	0	20	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0006	2211	14	7	4	0	0	3	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0007	2211	13	3	4	3	0	3	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0008	2211	8	0	2	5	1	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0009	2211	8	0	0	8	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0010	2211	6	5	0	0	0	1	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0011	2211	6	4	2	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0012	2211	5	0	0	5	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0013	2211	5	1	2	0	0	2	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0014	2211	4	4	0	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0015	2211	2	0	0	2	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0016	2211	2	1	0	1	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0017	2211	2	0	0	0	0	2	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0018	2211	2	0	1	0	1	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0019	2211	1	0	0	1	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0020	2211	1	0	0	0	0	1	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0021	2211	1	0	0	0	0	1	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0022	2211	1	0	0	1	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0023	2211	1	0	0	0	0	1	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0024	2211	1	0	0	1	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0025	2211	1	0	0	1	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0026	2211	1	1	0	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0027	2211	1	1	0	0	0	0	copy fasta	P3H3	chr12	6823407	6844847