JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
P3H3_chr12_6823407_6844847	0/0	c0028	2211	1	0	1	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0029	2211	1	0	0	0	0	1	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0030	2211	1	0	0	1	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0031	2211	1	0	0	1	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0032	2211	1	1	0	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0033	2223	1	0	0	1	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0034	2211	1	0	0	0	0	1	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0035	2211	1	1	0	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0036	2211	1	1	0	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0037	2211	1	1	0	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0038	2211	1	1	0	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	c0039	2211	1	1	0	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H4_chr17_41796953_41816949	1/0	c0001	1314	212	54	37	92	9	19	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/1	c0002	1314	158	18	37	80	7	15	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	c0003	1314	15	12	1	0	0	2	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	c0004	1314	3	3	0	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	c0005	1314	2	1	1	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	c0006	1314	2	0	0	0	0	2	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	c0007	1314	2	2	0	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	c0008	1314	1	0	0	1	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	c0009	1314	1	1	0	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	c0010	1314	1	1	0	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	c0011	1314	1	1	0	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	c0012	1314	1	1	0	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	c0013	1314	1	1	0	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	c0014	1314	1	0	0	1	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	c0015	1314	1	0	0	1	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	c0016	1314	1	0	0	1	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	c0017	1314	1	1	0	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3R3URF_chr1_46170486_46181488	1/1	c0001	288	419	97	82	176	18	44	copy fasta	P3R3URF	chr1	46170486	46181488
P3R3URF_chr1_46170486_46181488	0/0	c0002	288	1	1	0	0	0	0	copy fasta	P3R3URF	chr1	46170486	46181488
P3R3URF_chr1_46170486_46181488	0/0	c0003	288	1	0	1	0	0	0	copy fasta	P3R3URF	chr1	46170486	46181488
P3R3URF_chr1_46170486_46181488	0/0	c0004	288	1	0	1	0	0	0	copy fasta	P3R3URF	chr1	46170486	46181488
P4HA1_chr10_73002217_73101866	1/1	c0001	1605	214	65	22	105	2	18	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	c0002	1605	19	17	2	0	0	0	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	c0003	1605	1	0	0	1	0	0	copy fasta	P4HA1	chr10	73002217	73101866
P4HA2_chr5_132185147_132232853	1/1	c0001	1602	420	95	73	198	14	38	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	c0002	1602	2	2	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	c0003	1602	1	0	1	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	c0004	1602	1	0	0	1	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	c0005	1602	1	0	0	1	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	c0006	1602	1	1	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA3_chr11_74261657_74316640	1/1	c0001	1635	294	77	50	119	11	35	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	c0002	1635	87	7	8	59	3	10	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	c0003	1635	7	7	0	0	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	c0004	1635	2	2	0	0	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	c0005	1635	2	0	0	2	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	c0006	1635	2	2	0	0	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	c0007	1635	1	0	1	0	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	c0008	1635	1	1	0	0	0	0	copy fasta	P4HA3	chr11	74261657	74316640