JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
P4HA3_chr11_74261657_74316640	0/0	c0009	1635	1	0	0	0	0	1	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	c0010	1635	1	0	1	0	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HB_chr17_81838166_81865535	1/1	c0001	1527	243	53	51	95	9	33	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	c0002	1527	72	28	8	34	0	2	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	c0003	1527	51	4	23	20	3	1	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	c0004	1527	3	3	0	0	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	c0005	1527	2	2	0	0	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	c0006	1527	1	0	0	1	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	c0007	1527	1	1	0	0	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	c0008	1527	1	1	0	0	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HTM_chr3_48985241_49012153	1/1	c0001	1509	221	83	42	62	16	16	copy fasta	P4HTM	chr3	48985241	49012153
P4HTM_chr3_48985241_49012153	0/0	c0002	1509	1	1	0	0	0	0	copy fasta	P4HTM	chr3	48985241	49012153
PA2G4_chr12_56099559_56118910	1/1	c0001	1185	341	85	76	122	18	38	copy fasta	PA2G4	chr12	56099559	56118910
PA2G4_chr12_56099559_56118910	0/0	c0002	1185	8	0	0	8	0	0	copy fasta	PA2G4	chr12	56099559	56118910
PA2G4_chr12_56099559_56118910	0/0	c0003	1185	1	1	0	0	0	0	copy fasta	PA2G4	chr12	56099559	56118910
PA2G4_chr12_56099559_56118910	0/0	c0004	1185	1	1	0	0	0	0	copy fasta	PA2G4	chr12	56099559	56118910
PA2G4_chr12_56099559_56118910	0/0	c0005	1185	1	1	0	0	0	0	copy fasta	PA2G4	chr12	56099559	56118910
PAAF1_chr11_73871999_73936114	1/1	c0001	1179	258	77	46	96	7	30	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	c0002	1179	55	13	6	31	0	5	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	c0003	1179	48	3	5	26	3	11	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	c0004	1179	3	0	0	3	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	c0005	1179	2	1	1	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	c0006	1179	2	0	0	2	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	c0007	1179	1	1	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	c0008	1179	1	1	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PABIR1_chr9_68775065_68790566	1/1	c0001	864	428	92	74	208	16	36	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	c0002	864	5	5	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	c0003	864	2	0	2	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	c0004	864	1	1	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR2_chrX_134764566_134802205	1/1	c0001	804	215	60	32	93	6	22	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	c0002	804	2	0	1	0	1	0	copy fasta	PABIR2	chrX	134764566	134802205
PABIR3_chrX_134802237_134859832	1/1	c0001	813	198	60	29	79	5	23	copy fasta	PABIR3	chrX	134802237	134859832
PABIR3_chrX_134802237_134859832	0/0	c0002	812	1	0	0	0	0	1	copy fasta	PABIR3	chrX	134802237	134859832
PABPC1L2A_chrX_73072276_73084512	1/1	c0001	603	273	66	57	110	11	27	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	c0002	603	1	0	0	0	0	1	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2B_chrX_72997939_73011106	1/1	c0001	603	292	74	52	127	11	26	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	c0002	601	1	1	0	0	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	c0003	603	1	0	0	1	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L_chr20_44905060_44944316	1/0	c0001	1860	204	24	39	94	14	32	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	c0002	1860	100	26	22	41	3	8	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/1	c0003	1860	53	26	10	12	1	3	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	c0004	1860	8	0	0	8	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	c0005	1860	8	6	2	0	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	c0006	1860	7	7	0	0	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	c0007	1860	3	0	0	3	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	c0008	1860	3	3	0	0	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	c0009	1860	2	0	0	2	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	c0010	1860	2	0	2	0	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	c0011	1860	1	0	0	0	0	1	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	c0012	1860	1	1	0	0	0	0	copy fasta	PABPC1L	chr20	44905060	44944316