JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PABPC1L_chr20_44905060_44944316	0/0	c0013	1860	1	0	0	1	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	c0014	1860	1	0	0	1	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	c0015	1860	1	1	0	0	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	c0016	1860	1	0	1	0	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1_chr8_100697916_100727088	1/1	c0001	1911	386	71	62	199	16	36	copy fasta	PABPC1	chr8	100697916	100727088
PABPC1_chr8_100697916_100727088	0/0	c0002	1911	29	25	4	0	0	0	copy fasta	PABPC1	chr8	100697916	100727088
PABPC1_chr8_100697916_100727088	0/0	c0003	1911	1	0	0	1	0	0	copy fasta	PABPC1	chr8	100697916	100727088
PABPC3_chr13_25091136_25104254	1/1	c0001	1896	400	68	74	206	15	35	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0002	1896	12	9	2	1	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0003	1896	6	6	0	0	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0004	1896	6	2	1	0	2	1	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0005	1896	5	5	0	0	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0006	1896	4	0	3	0	1	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0007	1896	4	4	0	0	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0008	1896	2	2	0	0	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0009	1896	2	0	0	0	0	2	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0010	1896	2	0	0	2	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0011	1896	2	0	0	2	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0012	1896	2	0	0	0	0	2	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0013	1896	1	0	0	1	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0014	1896	1	0	0	0	0	1	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0015	1896	1	1	0	0	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0016	1896	1	0	0	0	0	1	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0017	1896	1	0	0	1	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0018	1896	1	0	0	0	0	1	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0019	1896	1	0	0	1	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0020	1896	1	0	0	1	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0021	1896	1	0	0	0	0	1	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0022	1896	1	0	0	1	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	c0023	1896	1	1	0	0	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC4L_chr4_134191333_134206789	0/0	c0001	1113	257	61	39	132	4	21	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	1/1	c0002	1113	99	22	39	2	9	25	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	c0003	1113	3	3	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	c0004	1113	2	2	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	c0005	1113	1	1	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	c0006	1113	1	1	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	c0007	1113	1	0	0	0	1	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4_chr1_39555816_39581790	1/0	c0001	1983	358	85	52	168	14	38	copy fasta	PABPC4	chr1	39555816	39581790
PABPC4_chr1_39555816_39581790	0/1	c0002	1983	12	1	6	0	3	1	copy fasta	PABPC4	chr1	39555816	39581790
PABPC4_chr1_39555816_39581790	0/0	c0003	1983	1	0	0	0	1	0	copy fasta	PABPC4	chr1	39555816	39581790
PABPC4_chr1_39555816_39581790	0/0	c0004	1983	1	0	0	1	0	0	copy fasta	PABPC4	chr1	39555816	39581790
PABPC4_chr1_39555816_39581790	0/0	c0005	1983	1	0	0	0	0	1	copy fasta	PABPC4	chr1	39555816	39581790
PABPC4_chr1_39555816_39581790	0/0	c0006	1983	1	0	0	1	0	0	copy fasta	PABPC4	chr1	39555816	39581790
PABPC5_chrX_91429839_91443584	1/1	c0001	1149	326	79	46	158	9	32	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	c0002	1149	6	1	5	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	c0003	1149	2	2	0	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	c0004	1149	1	0	1	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPN1L_chr16_88858333_88871660	1/1	c0001	837	405	80	76	190	13	44	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0002	837	7	7	0	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0003	837	6	2	0	4	0	0	copy fasta	PABPN1L	chr16	88858333	88871660