JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PABPN1L_chr16_88858333_88871660	0/0	c0004	837	6	5	1	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0005	837	5	0	1	0	2	2	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0006	837	4	0	2	0	2	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0007	837	3	3	0	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0008	837	2	0	0	0	0	2	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0009	837	2	0	1	0	1	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0010	837	2	0	0	2	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0011	837	1	0	1	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0012	837	1	0	0	1	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0013	837	1	0	0	1	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0014	837	1	0	0	1	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0015	837	1	0	0	1	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0016	837	1	0	1	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0017	837	1	1	0	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0018	837	1	1	0	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0019	837	1	0	1	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	c0020	837	1	1	0	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1_chr14_23316457_23331163	1/1	c0001	921	391	84	74	174	17	40	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	c0002	921	35	16	4	13	1	1	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	c0003	921	1	0	0	0	0	1	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	c0004	921	1	0	0	1	0	0	copy fasta	PABPN1	chr14	23316457	23331163
PACC1_chr1_212358928_212419886	1/1	c0001	1053	338	50	63	170	12	41	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	c0002	1053	27	26	1	0	0	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	c0003	1053	3	3	0	0	0	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	c0004	1053	2	0	2	0	0	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	c0005	1053	1	0	1	0	0	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	c0006	1053	1	1	0	0	0	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	c0007	1053	1	0	1	0	0	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	c0008	1053	1	0	0	0	0	1	copy fasta	PACC1	chr1	212358928	212419886
PACRGL_chr4_20695458_20737557	1/1	c0001	747	402	93	71	177	15	44	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	c0002	747	6	0	0	6	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	c0003	747	1	0	0	1	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	c0004	747	1	1	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	c0005	747	1	0	1	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	c0006	747	1	0	0	0	1	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRG_chr6_162722974_163320500	0/0	c0001	774	122	58	26	20	10	8	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	c0002	774	3	3	0	0	0	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	c0003	774	3	3	0	0	0	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	c0004	774	2	2	0	0	0	0	copy fasta	PACRG	chr6	162722974	163320500
PACS1_chr11_66065272_66249744	1/1	c0001	2892	302	76	46	144	10	24	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	c0002	2892	5	4	1	0	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	c0003	2892	4	4	0	0	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	c0004	2892	2	1	1	0	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	c0005	2892	1	0	0	1	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	c0006	2892	1	0	0	1	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	c0007	2892	1	0	0	1	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	c0008	2892	1	0	0	0	0	1	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	c0009	2892	1	0	0	1	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	c0010	2892	1	0	0	1	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	c0011	2892	1	0	0	0	0	1	copy fasta	PACS1	chr11	66065272	66249744