JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PACS1_chr11_66065272_66249744	0/0	c0012	2892	1	0	0	1	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	c0013	2892	1	1	0	0	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS2_chr14_105309748_105403147	1/1	c0001	2715	144	32	36	53	5	16	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0002	2715	28	24	0	2	0	2	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0003	2715	8	8	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0004	2715	6	6	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0005	2715	4	3	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0006	2715	4	3	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0007	2715	2	2	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0008	2715	2	0	2	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0009	2715	2	0	1	0	1	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0010	2715	1	0	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0011	2715	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0012	2715	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0013	2715	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0014	2715	1	0	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0015	2715	1	0	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0016	2715	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0017	2715	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0018	2715	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	c0019	2715	1	0	0	1	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACSIN1_chr6_34461076_34540223	1/1	c0001	1335	297	92	54	115	7	27	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	c0002	1335	9	2	0	1	3	3	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	c0003	1335	2	0	0	2	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	c0004	1335	1	0	0	1	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	c0005	1335	1	0	0	1	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN2_chr22_42864773_43020149	1/1	c0001	1461	202	57	34	81	6	22	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	c0002	1461	59	5	21	11	9	13	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	c0003	1461	13	10	1	0	1	1	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	c0004	1461	10	9	1	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	c0005	1461	6	6	0	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	c0006	1461	2	0	0	0	0	2	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	c0007	1461	1	1	0	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	c0008	1461	1	0	1	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN3_chr11_47172522_47191434	1/1	c0001	1275	292	46	70	121	10	43	copy fasta	PACSIN3	chr11	47172522	47191434
PACSIN3_chr11_47172522_47191434	0/0	c0002	1275	35	32	3	0	0	0	copy fasta	PACSIN3	chr11	47172522	47191434
PACSIN3_chr11_47172522_47191434	0/0	c0003	1275	23	0	4	18	0	1	copy fasta	PACSIN3	chr11	47172522	47191434
PACSIN3_chr11_47172522_47191434	0/0	c0004	1275	4	4	0	0	0	0	copy fasta	PACSIN3	chr11	47172522	47191434
PACSIN3_chr11_47172522_47191434	0/0	c0005	1275	3	3	0	0	0	0	copy fasta	PACSIN3	chr11	47172522	47191434
PACSIN3_chr11_47172522_47191434	0/0	c0006	1275	3	0	0	1	0	2	copy fasta	PACSIN3	chr11	47172522	47191434
PACSIN3_chr11_47172522_47191434	0/0	c0007	1275	1	0	0	0	0	1	copy fasta	PACSIN3	chr11	47172522	47191434
PACSIN3_chr11_47172522_47191434	0/0	c0008	1275	1	0	0	0	0	1	copy fasta	PACSIN3	chr11	47172522	47191434
PACSIN3_chr11_47172522_47191434	0/0	c0009	1275	1	1	0	0	0	0	copy fasta	PACSIN3	chr11	47172522	47191434
PACSIN3_chr11_47172522_47191434	0/0	c0010	1275	1	0	1	0	0	0	copy fasta	PACSIN3	chr11	47172522	47191434
PADI1_chr1_17200128_17251007	1/0	c0001	1992	158	38	18	87	6	8	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0002	1992	97	32	14	40	2	9	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0003	1992	37	1	18	14	0	4	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0004	1992	29	6	8	5	5	5	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/1	c0005	1992	24	4	5	4	1	9	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0006	1992	9	1	2	2	0	4	copy fasta	PADI1	chr1	17200128	17251007