JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PADI1_chr1_17200128_17251007	0/0	c0007	1992	8	6	2	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0008	1992	5	0	1	0	1	3	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0009	1992	5	0	2	2	0	1	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0010	1992	2	0	0	2	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0011	1992	2	2	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0012	1992	2	0	0	2	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0013	1992	2	0	0	0	0	2	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0014	1992	2	1	1	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0015	1992	2	1	1	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0016	1992	2	0	0	1	0	1	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0017	1992	2	0	0	1	1	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0018	1992	2	0	1	0	0	1	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0019	1992	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0020	1992	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0021	1992	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0022	1992	1	0	1	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0023	1992	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0024	1992	1	0	0	1	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0025	1992	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0026	1992	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0027	1992	1	0	0	1	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0028	1992	1	0	0	1	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0029	1992	1	0	0	1	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0030	1992	1	0	0	1	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0031	1992	1	0	1	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0032	1992	1	0	0	0	0	1	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0033	1992	1	0	1	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	c0034	1992	1	0	0	1	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI2_chr1_17061761_17124451	0/1	c0001	1998	113	16	22	55	5	14	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0002	1998	70	7	10	44	2	7	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0003	1998	41	13	3	18	4	3	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	1/0	c0004	1998	24	13	4	5	1	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0005	1998	15	5	5	0	2	3	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0006	1998	14	0	9	3	0	2	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0007	1998	6	3	3	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0008	1998	5	0	1	4	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0009	1998	5	0	4	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0010	1998	5	5	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0011	1998	5	0	0	5	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0012	1998	4	0	3	0	0	1	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0013	1998	4	0	0	4	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0014	1998	3	2	1	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0015	1998	3	2	1	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0016	1998	3	3	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0017	1998	3	2	0	0	0	1	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0018	1998	2	2	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0019	1998	2	1	1	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0020	1998	2	2	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0021	1998	2	2	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0022	1998	2	0	0	2	0	0	copy fasta	PADI2	chr1	17061761	17124451