JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PADI2_chr1_17061761_17124451	0/0	c0023	1998	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0024	1998	1	0	1	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0025	1998	1	0	1	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0026	1998	1	0	1	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0027	1998	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0028	1998	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0029	1998	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0030	1998	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0031	1998	1	0	0	0	0	1	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0032	1998	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0033	1998	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0034	1998	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0035	1998	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0036	1998	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0037	1998	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0038	1998	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0039	1998	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0040	1998	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0041	1998	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0042	1998	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0043	1998	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0044	1998	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	c0045	1998	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI3_chr1_17244098_17289233	1/0	c0001	1995	148	57	28	48	5	9	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0002	1995	91	13	15	49	3	11	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/1	c0003	1995	37	1	4	24	1	6	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0004	1995	36	2	7	17	1	9	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0005	1995	10	2	4	0	2	2	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0006	1995	6	0	3	0	3	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0007	1995	5	5	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0008	1995	5	0	1	3	0	1	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0009	1995	4	4	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0010	1995	3	2	1	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0011	1995	3	1	1	0	0	1	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0012	1995	2	0	0	2	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0013	1995	2	2	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0014	1995	2	0	2	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0015	1995	2	0	2	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0016	1995	1	0	1	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0017	1995	1	0	0	0	0	1	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0018	1995	1	0	1	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0019	1995	1	1	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0020	1995	1	1	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0021	1995	1	0	0	0	1	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0022	1995	1	0	1	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0023	1995	1	0	0	1	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0024	1995	1	1	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0025	1995	1	0	1	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0026	1995	1	0	0	1	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	c0027	1995	1	0	0	1	0	0	copy fasta	PADI3	chr1	17244098	17289233