JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PADI4_chr1_17303197_17369004	0/0	c0001	1992	142	25	23	72	5	17	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	1/0	c0002	1992	127	21	23	62	3	17	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0003	1992	16	2	8	0	4	2	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0004	1992	14	5	3	6	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0005	1992	13	10	2	0	0	1	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0006	1992	5	3	2	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0007	1992	4	3	1	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0008	1992	4	4	0	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0009	1992	4	0	4	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0010	1992	4	2	0	2	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0011	1992	3	3	0	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0012	1992	3	1	2	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0013	1992	3	0	2	0	1	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0014	1992	3	0	2	0	0	1	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0015	1992	3	2	1	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0016	1992	2	0	0	2	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0017	1992	2	0	0	0	1	1	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0018	1992	2	2	0	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/1	c0019	1992	2	0	0	0	0	1	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0020	1992	2	0	0	2	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0021	1992	2	2	0	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0022	1992	2	2	0	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0023	1992	1	0	0	1	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0024	1992	1	1	0	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0025	1992	1	0	0	1	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0026	1992	1	0	0	0	0	1	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0027	1992	1	1	0	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0028	1992	1	1	0	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0029	1992	1	0	1	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0030	1992	1	1	0	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0031	1992	1	1	0	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	c0032	1992	1	0	0	0	0	1	copy fasta	PADI4	chr1	17303197	17369004
PADI6_chr1_17367196_17406699	1/1	c0001	2085	271	67	59	105	9	29	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0002	2085	70	10	2	51	2	5	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0003	2085	32	7	7	9	2	7	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0004	2085	6	0	6	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0005	2085	6	5	1	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0006	2085	4	0	3	0	0	1	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0007	2085	2	2	0	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0008	2085	2	0	0	0	2	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0009	2085	2	1	1	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0010	2085	2	0	0	0	0	2	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0011	2085	1	1	0	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0012	2085	1	1	0	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0013	2085	1	0	0	0	0	1	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0014	2085	1	0	0	0	0	1	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0015	2085	1	0	0	1	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0016	2085	1	0	0	0	0	1	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0017	2085	1	0	0	1	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0018	2085	1	1	0	0	0	0	copy fasta	PADI6	chr1	17367196	17406699