JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PAGE1_chrX_49682447_49700984	0/0	c0006	443	1	1	0	0	0	0	copy fasta	PAGE1	chrX	49682447	49700984
PAGE1_chrX_49682447_49700984	0/0	c0007	441	1	0	0	0	0	1	copy fasta	PAGE1	chrX	49682447	49700984
PAGE1_chrX_49682447_49700984	0/0	c0008	441	1	0	1	0	0	0	copy fasta	PAGE1	chrX	49682447	49700984
PAGE2B_chrX_55070030_55083909	1/1	c0001	336	306	67	55	143	11	28	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	c0002	336	10	10	0	0	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	c0003	336	2	0	2	0	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	c0004	336	2	0	0	2	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	c0005	336	1	0	0	1	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	c0006	319	1	1	0	0	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	c0007	337	1	0	0	1	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	c0008	336	1	0	0	1	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	c0009	337	1	0	0	1	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2_chrX_55084018_55097842	0/0	c0001	336	253	35	51	130	9	28	copy fasta	PAGE2	chrX	55084018	55097842
PAGE2_chrX_55084018_55097842	0/0	c0002	336	29	13	4	10	0	2	copy fasta	PAGE2	chrX	55084018	55097842
PAGE2_chrX_55084018_55097842	0/0	c0003	336	23	22	1	0	0	0	copy fasta	PAGE2	chrX	55084018	55097842
PAGE2_chrX_55084018_55097842	0/0	c0004	336	10	10	0	0	0	0	copy fasta	PAGE2	chrX	55084018	55097842
PAGE2_chrX_55084018_55097842	0/0	c0005	336	1	0	1	0	0	0	copy fasta	PAGE2	chrX	55084018	55097842
PAGE3_chrX_55253415_55269916	0/0	c0001	342	149	17	28	82	5	17	copy fasta	PAGE3	chrX	55253415	55269916
PAGE3_chrX_55253415_55269916	0/0	c0002	342	116	27	24	56	2	7	copy fasta	PAGE3	chrX	55253415	55269916
PAGE3_chrX_55253415_55269916	1/1	c0003	342	48	38	4	0	0	4	copy fasta	PAGE3	chrX	55253415	55269916
PAGE3_chrX_55253415_55269916	0/0	c0004	342	20	0	0	20	0	0	copy fasta	PAGE3	chrX	55253415	55269916
PAGE4_chrX_49824303_49839264	1/1	c0001	309	284	70	53	124	9	26	copy fasta	PAGE4	chrX	49824303	49839264
PAGE4_chrX_49824303_49839264	0/0	c0002	309	4	4	0	0	0	0	copy fasta	PAGE4	chrX	49824303	49839264
PAGE4_chrX_49824303_49839264	0/0	c0003	309	1	0	1	0	0	0	copy fasta	PAGE4	chrX	49824303	49839264
PAGE4_chrX_49824303_49839264	0/0	c0004	309	1	0	0	1	0	0	copy fasta	PAGE4	chrX	49824303	49839264
PAGE5_chrX_55215346_55229108	1/1	c0001	333	295	77	52	129	7	28	copy fasta	PAGE5	chrX	55215346	55229108
PAGE5_chrX_55215346_55229108	0/0	c0002	333	3	3	0	0	0	0	copy fasta	PAGE5	chrX	55215346	55229108
PAGE5_chrX_55215346_55229108	0/0	c0003	333	1	0	0	1	0	0	copy fasta	PAGE5	chrX	55215346	55229108
PAGR1_chr16_29811152_29827489	1/1	c0001	765	327	76	47	156	16	30	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	c0002	765	1	0	1	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAH_chr12_102831889_102922244	0/0	c0001	1359	139	57	45	12	6	19	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0002	1359	76	1	12	54	2	7	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0003	1359	42	2	9	23	3	5	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0004	1359	14	12	2	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0005	1359	9	0	0	9	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0006	1359	6	5	0	0	0	1	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0007	1359	6	6	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0008	1359	6	5	1	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0009	1359	5	5	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0010	1359	2	0	2	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0011	1359	1	0	1	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0012	1359	1	0	0	0	1	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0013	1359	1	1	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0014	1359	1	1	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0015	1359	1	1	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0016	1359	1	0	1	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	c0017	1359	1	0	1	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAICS_chr4_56431260_56469578	1/1	c0001	1278	368	83	56	180	12	35	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	c0002	1278	7	0	4	0	2	1	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	c0003	1278	2	2	0	0	0	0	copy fasta	PAICS	chr4	56431260	56469578