JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PAICS_chr4_56431260_56469578	0/0	c0004	1278	1	1	0	0	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	c0005	1278	1	0	0	1	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	c0006	1278	1	0	0	1	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAIP1_chr5_43521267_43562077	1/1	c0001	1440	340	82	69	127	16	44	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	c0002	1440	3	3	0	0	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	c0003	1440	1	1	0	0	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	c0004	1440	1	0	0	0	0	1	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	c0005	1440	1	0	0	0	0	1	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	c0006	1440	1	1	0	0	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	c0007	1440	1	1	0	0	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	c0008	1440	1	0	0	1	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	c0009	1440	1	0	1	0	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP2B_chr2_71177738_71232103	0/1	c0001	372	223	56	48	88	9	21	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	c0002	372	125	28	19	57	5	16	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	c0003	372	15	7	2	3	1	2	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	1/0	c0004	372	13	2	7	0	1	2	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	c0005	372	1	1	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	c0006	372	1	0	0	0	0	1	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2_chr5_139336854_139374717	1/1	c0001	384	341	84	62	141	16	36	copy fasta	PAIP2	chr5	139336854	139374717
PAIP2_chr5_139336854_139374717	0/0	c0002	384	3	0	0	3	0	0	copy fasta	PAIP2	chr5	139336854	139374717
PAK1IP1_chr6_10689972_10714782	1/1	c0001	1179	238	80	55	54	13	34	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	c0002	1179	9	8	1	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	c0003	1179	5	0	5	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	c0004	1179	2	0	1	0	1	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	c0005	1179	2	2	0	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1_chr11_77317017_77479094	1/1	c0001	1638	299	83	47	144	3	20	copy fasta	PAK1	chr11	77317017	77479094
PAK1_chr11_77317017_77479094	0/0	c0002	1638	2	0	1	0	1	0	copy fasta	PAK1	chr11	77317017	77479094
PAK1_chr11_77317017_77479094	0/0	c0003	1638	1	1	0	0	0	0	copy fasta	PAK1	chr11	77317017	77479094
PAK2_chr3_196734857_196837647	1/1	c0001	1575	152	36	30	48	10	26	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	c0002	1575	11	11	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	c0003	1575	9	0	5	4	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	c0004	1575	3	3	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	c0005	1532	1	0	1	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	c0006	1604	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	c0007	1575	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK3_chrX_111091191_111232361	1/1	c0001	1635	190	73	20	70	7	18	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	c0002	1635	3	2	1	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	c0003	1635	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	c0004	1634	1	0	0	1	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK4_chr19_39120786_39184404	1/1	c0001	1776	336	64	72	144	13	41	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0002	1776	4	4	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0003	1776	3	3	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0004	1776	3	0	1	0	0	2	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0005	1776	2	2	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0006	1776	2	2	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0007	1776	2	0	1	0	1	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0008	1776	2	2	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0009	1776	2	2	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0010	1776	1	0	0	1	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0011	1776	1	0	1	0	0	0	copy fasta	PAK4	chr19	39120786	39184404