JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PAK4_chr19_39120786_39184404	0/0	c0012	1776	1	0	1	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0013	1776	1	0	1	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0014	1776	1	0	0	1	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0015	1776	1	1	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0016	1776	1	1	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0017	1776	1	0	0	1	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0018	1776	1	0	1	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0019	1776	1	0	0	0	0	1	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0020	1776	1	0	0	1	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	c0021	1776	1	1	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK5_chr20_9532370_9844076	1/1	c0001	2160	71	16	14	27	6	6	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0002	2160	55	35	11	0	1	8	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0003	2160	24	3	2	18	1	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0004	2160	20	0	1	17	0	2	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0005	2160	9	4	1	0	1	3	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0006	2160	7	6	1	0	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0007	2160	7	0	4	0	1	2	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0008	2160	3	0	3	0	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0009	2160	3	3	0	0	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0010	2160	2	0	0	2	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0011	2160	1	1	0	0	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0012	2160	1	1	0	0	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0013	2160	1	1	0	0	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0014	2160	1	0	0	1	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0015	2160	1	0	1	0	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0016	2160	1	0	0	0	0	1	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	c0017	2160	1	0	0	1	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK6_chr15_40234063_40282487	1/1	c0001	2046	176	48	45	43	11	27	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0002	2046	100	10	8	77	0	5	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0003	2046	88	30	5	42	1	10	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0004	2046	38	0	9	21	5	3	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0005	2046	4	4	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0006	2046	4	4	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0007	2046	2	0	0	2	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0008	2046	2	0	2	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0009	2046	2	0	0	2	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0010	2046	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0011	2046	1	1	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0012	2046	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0013	2046	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0014	2046	1	0	0	0	1	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0015	2046	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0016	2046	1	0	1	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0017	2046	1	1	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0018	2046	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	c0019	2046	1	0	0	0	0	1	copy fasta	PAK6	chr15	40234063	40282487
PALB2_chr16_23598165_23646310	1/1	c0001	3561	239	39	53	108	12	25	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0002	3561	52	12	3	27	2	8	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0003	3561	10	10	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0004	3561	3	0	3	0	0	0	copy fasta	PALB2	chr16	23598165	23646310