JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PALB2_chr16_23598165_23646310	0/0	c0005	3561	3	3	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0006	3561	2	2	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0007	3561	2	2	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0008	3561	1	0	0	0	0	1	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0009	3561	1	0	1	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0010	3561	1	0	0	1	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0011	3561	1	1	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0012	3561	1	0	0	1	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0013	3561	1	0	1	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0014	3561	1	1	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0015	3561	1	0	1	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0016	3561	1	0	0	1	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0017	3561	1	1	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0018	3561	1	0	0	1	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0019	3561	1	1	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0020	3561	1	1	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0021	3561	1	0	0	1	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	c0022	3561	1	1	0	0	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALD1_chr10_70473767_70573450	0/0	c0001	2571	118	43	26	25	4	20	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0002	2571	51	0	8	36	3	4	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0003	2571	37	0	10	24	3	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	1/0	c0004	2571	20	18	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0005	2571	14	1	5	1	1	6	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/1	c0006	2571	10	0	4	0	1	4	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0007	2571	8	1	2	1	0	4	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0008	2571	5	4	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0009	2571	5	0	0	4	0	1	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0010	2571	4	1	3	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0011	2571	3	1	2	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0012	2571	3	3	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0013	2571	2	2	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0014	2571	2	2	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0015	2571	2	2	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0016	2627	2	2	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0017	2571	2	2	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0018	2571	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0019	2571	1	0	0	0	0	1	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0020	2571	1	0	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0021	2571	1	0	0	1	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0022	2571	1	0	0	1	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0023	2571	1	0	0	0	0	1	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0024	2571	1	0	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0025	2571	1	0	0	0	0	1	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0026	2571	1	0	0	0	0	1	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0027	2571	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0028	2571	1	0	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0029	2571	1	0	0	0	0	1	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0030	2571	1	0	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0031	2571	1	0	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0032	2571	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450