JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PALD1_chr10_70473767_70573450	0/0	c0033	2571	1	0	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0034	2571	1	0	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0035	2571	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0036	2571	1	0	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	c0037	2571	1	0	0	1	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALLD_chr4_168492052_168933441	1/0	c0001	3372	63	17	20	10	2	13	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0002	3372	20	12	6	0	1	1	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0003	3372	16	8	1	6	0	1	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0004	3372	11	5	0	6	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0005	3372	5	0	1	2	0	2	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0006	3372	5	3	1	1	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0007	3372	5	0	2	0	0	3	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0008	3372	4	3	1	0	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0009	3372	3	3	0	0	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0010	3372	3	1	0	2	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0011	3372	2	0	1	0	0	1	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0012	3372	2	1	1	0	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0013	3372	2	0	0	2	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0014	3372	2	0	0	1	1	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/1	c0015	3372	2	0	1	0	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0016	3372	1	1	0	0	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0017	3372	1	0	1	0	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0018	3372	1	1	0	0	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0019	3372	1	0	0	1	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0020	3372	1	0	0	0	0	1	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0021	3372	1	0	0	1	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0022	3372	1	1	0	0	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0023	3372	1	1	0	0	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0024	3372	1	1	0	0	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0025	3372	1	1	0	0	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALLD_chr4_168492052_168933441	0/0	c0026	3372	1	1	0	0	0	0	copy fasta	PALLD	chr4	168492052	168933441
PALM2AKAP2_chr9_109775198_110177512	0/1	c0001	3312	77	26	12	20	4	14	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0002	3312	48	0	9	34	1	4	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0003	3318	29	4	5	17	1	2	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0004	3312	23	13	1	2	3	4	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	1/0	c0005	3312	9	1	3	0	1	3	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0006	3312	8	7	1	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0007	3312	7	6	1	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0008	3312	5	5	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0009	3312	2	1	1	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0010	3312	2	2	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0011	3312	2	2	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0012	3312	1	0	0	1	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0013	3312	1	1	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0014	3312	1	0	0	1	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0015	3312	1	0	0	1	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0016	3312	1	0	1	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0017	3312	1	0	1	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0018	3312	1	1	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0019	3312	1	0	0	0	0	1	copy fasta	PALM2AKAP2	chr9	109775198	110177512