JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGAP44_chr17_12784498_12996643	0/0	c0012	2457	1	0	1	0	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	c0013	2457	1	0	0	0	0	1	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	c0014	2457	1	0	0	0	0	1	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	c0015	2457	1	0	0	1	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	c0016	2457	1	0	0	1	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	c0017	2457	1	0	0	0	0	1	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP45_chr19_1062167_1091628	0/0	c0001	3411	86	2	24	40	5	15	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0002	3411	79	15	13	41	4	6	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	1/0	c0003	3411	72	3	4	51	2	11	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0004	3411	39	12	10	6	3	8	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0005	3411	16	9	6	1	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0006	3411	10	1	0	8	0	1	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0007	3411	7	0	2	4	0	1	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0008	3411	6	0	3	3	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0009	3411	6	0	2	1	2	1	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0010	3411	5	5	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0011	3411	5	0	3	2	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0012	3411	5	5	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0013	3411	4	0	0	4	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0014	3411	4	0	0	4	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0015	3411	4	0	2	1	0	1	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0016	3411	3	1	0	1	1	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0017	3411	3	2	1	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0018	3411	3	1	2	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0019	3411	3	3	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0020	3417	3	3	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0021	3411	3	0	2	0	0	1	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0022	3411	2	0	0	1	0	1	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0023	3411	2	2	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0024	3411	2	2	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0025	3411	2	0	0	2	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0026	3411	2	0	0	1	1	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0027	3411	2	2	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0028	3411	2	2	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0029	3411	2	2	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0030	3411	2	0	0	2	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0031	3411	2	0	0	2	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0032	3411	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/1	c0033	3411	1	0	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0034	3411	1	0	1	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0035	3411	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0036	3411	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0037	3417	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0038	3411	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0039	3411	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0040	3411	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0041	3411	1	0	0	0	0	1	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0042	3411	1	0	0	1	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0043	3411	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	c0044	3411	1	0	1	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628