JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PALM2AKAP2_chr9_109775198_110177512	0/0	c0020	3312	1	0	1	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	c0021	3318	1	1	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM3_chr19_14048367_14067076	1/0	c0001	2067	274	24	45	163	7	34	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0002	2067	34	29	1	2	0	2	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0003	2067	33	3	14	13	1	2	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0004	2067	21	0	9	8	2	2	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0005	2067	14	14	0	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0006	2067	8	0	3	1	0	4	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0007	2067	6	0	3	0	2	1	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0008	2067	5	5	0	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0009	2067	5	4	1	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0010	2064	5	5	0	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0011	2067	4	0	0	0	2	2	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0012	2067	4	3	1	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0013	2067	3	0	2	0	0	1	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0014	2067	3	1	1	0	1	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0015	2064	2	2	0	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0016	2067	2	2	0	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/1	c0017	2067	2	0	1	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0018	2067	1	0	1	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0019	2067	1	1	0	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0020	2067	1	1	0	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0021	2067	1	0	0	1	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0022	2067	1	0	0	0	1	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0023	2067	1	0	0	1	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0024	2067	1	0	0	1	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0025	2067	1	1	0	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0026	2067	1	0	0	0	1	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0027	2067	1	0	0	0	1	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0028	2067	1	0	0	1	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0029	2067	1	1	0	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	c0030	2067	1	0	0	1	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALMD_chr1_99641113_99699535	1/1	c0001	1656	330	55	65	161	12	35	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	c0002	1656	21	16	1	1	0	3	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	c0003	1656	5	5	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	c0004	1656	5	5	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	c0005	1656	4	4	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	c0006	1656	3	2	1	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	c0007	1656	2	0	2	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	c0008	1656	2	2	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	c0009	1656	2	0	1	0	0	1	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	c0010	1656	1	1	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	c0011	1656	1	0	0	0	0	1	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	c0012	1656	1	1	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	c0013	1656	1	1	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	c0014	1656	1	1	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	c0015	1656	1	1	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALM_chr19_703935_753329	1/1	c0001	1164	134	19	43	45	10	15	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	c0002	1164	122	42	14	44	3	19	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	c0003	1164	55	24	15	10	1	5	copy fasta	PALM	chr19	703935	753329