JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PALM_chr19_703935_753329	0/0	c0004	1164	38	0	2	33	0	3	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	c0005	1164	27	0	1	26	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	c0006	1164	7	4	2	0	0	1	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	c0007	1164	6	0	0	6	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	c0008	1164	4	0	0	0	1	3	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	c0009	1164	3	0	2	0	1	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	c0010	1164	2	0	0	2	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	c0011	1164	1	0	0	1	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	c0012	1164	1	1	0	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	c0013	1164	1	1	0	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	c0014	1164	1	0	1	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	c0015	1164	1	0	0	1	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	c0016	1164	1	1	0	0	0	0	copy fasta	PALM	chr19	703935	753329
PALS1_chr14_67236435_67341061	1/0	c0001	2028	169	46	41	68	3	10	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	c0002	2028	111	33	16	56	1	5	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	c0003	2028	3	0	3	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	c0004	2028	2	0	0	1	0	1	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	c0005	2028	1	1	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	c0006	2028	1	0	0	1	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/1	c0007	2028	1	0	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	c0008	2028	1	1	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	c0009	2028	1	1	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS2_chr7_24568452_24699193	0/0	c0001	1623	254	65	29	138	2	20	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	1/1	c0002	1623	98	7	29	38	10	12	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	c0003	1623	8	6	2	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	c0004	1623	8	8	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	c0005	1623	3	3	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	c0006	1623	2	2	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	c0007	1623	2	2	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	c0008	1623	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	c0009	1623	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	c0010	1623	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PAM16_chr16_4335251_4356321	0/1	c0001	378	306	76	66	109	13	41	copy fasta	PAM16	chr16	4335251	4356321
PAM16_chr16_4335251_4356321	0/0	c0002	378	59	22	6	25	2	4	copy fasta	PAM16	chr16	4335251	4356321
PAM16_chr16_4335251_4356321	0/0	c0003	378	2	0	0	0	1	1	copy fasta	PAM16	chr16	4335251	4356321
PAMR1_chr11_35426827_35530616	1/1	c0001	2163	304	53	55	152	8	34	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0002	2163	19	12	2	0	1	4	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0003	2163	19	1	6	10	2	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0004	2163	9	6	3	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0005	2163	4	4	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0006	2163	3	0	0	3	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0007	2163	3	3	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0008	2163	2	2	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0009	2163	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0010	2163	1	0	0	0	1	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0011	2163	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0012	2163	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0013	2163	1	0	0	1	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0014	2163	1	0	0	1	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0015	2163	1	0	0	1	0	0	copy fasta	PAMR1	chr11	35426827	35530616