JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PAMR1_chr11_35426827_35530616	0/0	c0016	2163	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0017	2163	1	0	0	1	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0018	2163	1	0	1	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0019	2163	1	0	0	1	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0020	2163	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0021	2163	1	0	1	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0022	2163	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	c0023	2163	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAM_chr5_102750305_103034716	1/0	c0001	2922	115	51	21	27	1	14	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/1	c0002	2922	60	11	9	34	1	4	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	c0003	2922	2	1	0	1	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	c0004	2922	2	0	2	0	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	c0005	2922	2	2	0	0	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	c0006	2922	1	1	0	0	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	c0007	2922	1	1	0	0	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	c0008	2922	1	1	0	0	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	c0009	2922	1	0	1	0	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	c0010	2922	1	0	1	0	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	c0011	2922	1	0	0	1	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	c0012	2922	1	0	0	1	0	0	copy fasta	PAM	chr5	102750305	103034716
PAN2_chr12_56311936_56339000	0/1	c0001	3597	254	28	43	137	12	33	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	1/0	c0002	3597	48	43	4	0	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	c0003	3597	18	0	4	12	2	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	c0004	3597	3	0	0	3	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	c0005	3597	3	3	0	0	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	c0006	3597	2	2	0	0	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	c0007	3597	1	0	0	1	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	c0008	3597	1	1	0	0	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	c0009	3597	1	1	0	0	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	c0010	3597	1	0	1	0	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	c0011	3597	1	0	0	0	1	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	c0012	3597	1	0	0	0	0	1	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	c0013	3597	1	0	0	0	1	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	c0014	3597	1	0	0	1	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN3_chr13_28133545_28300335	1/1	c0001	2664	238	71	31	107	2	25	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	c0002	2664	5	4	1	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	c0003	2664	3	3	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	c0004	2664	1	0	1	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	c0005	2664	1	0	0	0	0	1	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	c0006	2664	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	c0007	2664	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	c0008	2664	1	0	1	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	c0009	2664	1	0	0	1	0	0	copy fasta	PAN3	chr13	28133545	28300335
PANK1_chr10_89577988_89650242	0/0	c0001	1386	168	29	36	85	6	12	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	c0002	1386	86	30	6	31	0	19	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	c0003	1386	43	11	7	18	1	6	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	1/1	c0004	1386	42	12	19	1	5	3	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	c0005	1386	13	2	3	1	2	5	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	c0006	1386	11	8	2	0	0	1	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	c0007	1386	2	0	1	0	0	1	copy fasta	PANK1	chr10	89577988	89650242