JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PANK1_chr10_89577988_89650242	0/0	c0008	1386	1	0	0	0	0	1	copy fasta	PANK1	chr10	89577988	89650242
PANK2_chr20_3884387_3934887	0/1	c0001	1383	301	86	49	125	9	31	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	1/0	c0002	1383	64	0	5	45	3	10	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	c0003	1383	45	3	18	24	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	c0004	1383	3	3	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	c0005	1383	2	0	0	2	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	c0006	1383	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	c0007	1383	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	c0008	1366	1	0	0	0	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	c0009	1383	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	c0010	1383	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	c0011	1383	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	c0012	1383	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK3_chr5_168543495_168584368	1/1	c0001	1113	407	93	77	183	16	36	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	c0002	1113	2	2	0	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	c0003	1113	2	1	1	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	c0004	1113	2	0	0	2	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	c0005	1113	1	0	0	1	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	c0006	1113	1	1	0	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	c0007	1113	1	1	0	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK4_chr1_2503537_2531596	0/0	c0001	2322	137	48	21	56	3	9	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0002	2322	100	2	16	63	4	15	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/1	c0003	2322	73	17	11	36	1	7	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0004	2322	42	14	13	5	4	6	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0005	2322	12	0	0	12	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0006	2322	8	2	0	4	0	2	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0007	2322	5	5	0	0	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0008	2322	3	3	0	0	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0009	2322	3	0	0	0	0	3	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0010	2322	2	0	2	0	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0011	2322	2	0	2	0	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0012	2322	1	0	0	1	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0013	2322	1	0	1	0	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0014	2322	1	1	0	0	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0015	2322	1	0	0	1	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0016	2322	1	0	0	1	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0017	2322	1	0	1	0	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0018	2322	1	1	0	0	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0019	2322	1	1	0	0	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0020	2322	1	0	0	1	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0021	2322	1	0	0	0	0	1	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0022	2322	1	0	1	0	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	c0023	2322	1	0	0	0	0	1	copy fasta	PANK4	chr1	2503537	2531596
PANX1_chr11_94123841_94186968	0/1	c0001	1281	257	52	57	111	8	28	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	1/0	c0002	1281	62	1	12	35	2	11	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	c0003	1281	40	6	5	26	1	2	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	c0004	1281	23	2	0	18	1	2	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	c0005	1281	11	11	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	c0006	1281	5	5	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	c0007	1281	2	0	0	2	0	0	copy fasta	PANX1	chr11	94123841	94186968