JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PANX1_chr11_94123841_94186968	0/0	c0008	1281	1	1	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	c0009	1281	1	0	0	1	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	c0010	1281	1	1	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	c0011	1281	1	1	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	c0012	1281	1	1	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	c0013	1281	1	0	0	1	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	c0014	1281	1	1	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	c0015	1281	1	0	0	0	0	1	copy fasta	PANX1	chr11	94123841	94186968
PANX2_chr22_50165731_50185295	0/1	c0001	2034	226	48	44	95	11	27	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	c0002	2034	113	43	18	32	3	17	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	1/0	c0003	2034	83	2	17	57	2	4	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	c0004	2035	3	1	2	0	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	c0005	2035	3	1	1	1	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	c0006	2035	3	0	0	3	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	c0007	2034	2	0	2	0	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	c0008	2034	2	2	0	0	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	c0009	2034	1	0	0	0	0	1	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	c0010	2034	1	0	0	0	0	1	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	c0011	2034	1	0	0	1	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	c0012	2035	1	1	0	0	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	c0013	2034	1	0	0	1	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX3_chr11_124606428_124625356	1/1	c0001	1179	391	93	76	166	11	43	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	c0002	1179	8	0	5	0	2	1	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	c0003	1179	5	0	0	5	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	c0004	1179	2	2	0	0	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	c0005	1179	2	2	0	0	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	c0006	1179	2	0	2	0	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	c0007	1179	2	0	0	0	2	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	c0008	1179	2	0	1	0	0	1	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	c0009	1179	1	0	0	1	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	c0010	1179	1	1	0	0	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	c0011	1179	1	1	0	0	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	c0012	1179	1	0	0	0	1	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	c0013	1179	1	0	0	0	0	1	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	c0014	1179	1	1	0	0	0	0	copy fasta	PANX3	chr11	124606428	124625356
PAOX_chr10_133374262_133396694	0/1	c0001	1536	265	60	57	105	17	25	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	1/0	c0002	1536	55	36	10	1	1	6	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	c0003	1536	9	0	0	9	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	c0004	1536	5	0	2	0	0	3	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	c0005	1536	4	0	4	0	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	c0006	1536	3	3	0	0	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	c0007	1536	1	0	1	0	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	c0008	1536	1	1	0	0	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	c0009	1536	1	0	0	1	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	c0010	1536	1	0	0	1	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	c0011	1536	1	0	0	1	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAPLN_chr14_73232506_73279623	1/0	c0001	3837	78	5	20	36	8	8	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	c0002	3837	59	0	11	45	0	3	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/1	c0003	3837	35	19	12	2	1	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	c0004	3837	35	5	6	24	0	0	copy fasta	PAPLN	chr14	73232506	73279623