JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PAPLN_chr14_73232506_73279623	0/0	c0055	3837	1	0	1	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	c0056	3837	1	1	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	c0057	3837	1	0	1	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	c0058	3837	1	1	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	c0059	3837	1	1	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	c0060	3837	1	0	0	1	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	c0061	3837	1	0	1	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	c0062	3837	1	0	0	1	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	c0063	3837	1	0	0	1	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	c0064	3837	1	1	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	c0065	3837	1	0	0	1	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPOLA_chr14_96497382_96572116	1/1	c0001	2238	304	83	48	113	14	44	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	c0002	2238	5	5	0	0	0	0	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	c0003	2238	1	0	0	1	0	0	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLB_chr7_4852738_4867030	1/1	c0001	1914	223	20	45	130	9	17	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0002	1914	101	6	23	51	3	18	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0003	1914	36	7	3	18	2	6	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0004	1914	19	18	0	0	0	1	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0005	1914	15	14	1	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0006	1914	12	11	1	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0007	1914	11	9	2	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0008	1914	5	4	1	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0009	1914	3	0	0	3	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0010	1914	2	0	0	0	2	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0011	1914	2	0	0	0	0	2	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0012	1914	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0013	1914	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0014	1914	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0015	1914	1	0	0	1	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0016	1914	1	0	0	1	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0017	1914	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0018	1914	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0019	1914	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	c0020	1914	1	1	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLG_chr2_60751268_60807086	1/1	c0001	2211	315	80	76	107	16	34	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	c0002	2211	3	3	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	c0003	2211	3	0	0	3	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	c0004	2211	2	2	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	c0005	2211	1	1	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	c0006	2211	1	0	0	1	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	c0007	2211	1	1	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	c0008	2211	1	0	0	1	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPOLG_chr2_60751268_60807086	0/0	c0009	2211	1	1	0	0	0	0	copy fasta	PAPOLG	chr2	60751268	60807086
PAPPA2_chr1_176458175_176850601	1/0	c0001	5376	72	36	13	5	5	12	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	c0002	5376	13	13	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/1	c0003	5376	10	0	2	0	3	4	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	c0004	5376	5	5	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	c0005	5376	4	4	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	c0006	5376	3	2	0	0	0	1	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	c0007	5376	1	0	0	0	0	1	copy fasta	PAPPA2	chr1	176458175	176850601