JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PAPPA2_chr1_176458175_176850601	0/0	c0008	5376	1	0	0	0	0	1	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	c0009	5376	1	0	0	1	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	c0010	5376	1	0	0	0	1	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	c0011	5376	1	0	0	0	1	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	c0012	5376	1	0	0	0	0	1	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	c0013	5376	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	c0014	5376	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	c0015	5376	1	0	1	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	c0016	5376	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA2_chr1_176458175_176850601	0/0	c0017	5376	1	1	0	0	0	0	copy fasta	PAPPA2	chr1	176458175	176850601
PAPPA_chr9_116148791_116407321	0/0	c0001	4884	49	3	12	29	1	4	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0002	4884	36	3	9	13	3	8	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/1	c0003	4884	33	10	11	6	1	4	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	1/0	c0004	4884	27	12	4	9	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0005	4884	9	0	3	6	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0006	4884	5	5	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0007	4890	4	0	2	1	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0008	4884	4	0	0	0	0	4	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0009	4884	4	0	2	0	2	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0010	4884	3	0	0	3	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0011	4884	3	0	0	3	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0012	4890	2	0	0	1	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0013	4887	2	2	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0014	4887	2	1	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0015	4887	2	2	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0016	4884	2	2	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0017	4884	2	2	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0018	4884	2	2	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0019	4884	2	2	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0020	4890	1	0	0	0	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0021	4890	1	0	0	0	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0022	4890	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0023	4890	1	0	0	0	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0024	4887	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0025	4887	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0026	4887	1	0	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0027	4887	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0028	4887	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0029	4884	1	0	0	0	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0030	4884	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0031	4884	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0032	4884	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0033	4884	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0034	4884	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0035	4884	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0036	4884	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0037	4884	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0038	4884	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0039	4884	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0040	4884	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321