JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PAPPA_chr9_116148791_116407321	0/0	c0041	4884	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0042	4884	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0043	4884	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0044	4884	1	0	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0045	4884	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0046	4884	1	0	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0047	4884	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0048	4884	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0049	4884	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0050	4884	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0051	4884	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0052	4884	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0053	4884	1	0	0	0	1	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0054	4884	1	0	1	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0055	4884	1	0	0	1	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0056	4884	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0057	4884	1	0	0	0	0	1	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0058	4875	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0059	4875	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPPA_chr9_116148791_116407321	0/0	c0060	4887	1	1	0	0	0	0	copy fasta	PAPPA	chr9	116148791	116407321
PAPSS1_chr4_107608666_107725234	0/0	c0001	1875	87	28	22	26	2	9	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/1	c0002	1875	69	19	9	26	4	10	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	c0003	1875	37	11	4	19	1	2	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	c0004	1875	34	3	9	17	1	4	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	1/0	c0005	1875	32	10	4	14	1	2	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	c0006	1875	7	1	0	4	0	2	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	c0007	1875	2	0	0	0	1	1	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	c0008	1875	1	1	0	0	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	c0009	1875	1	1	0	0	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	c0010	1875	1	1	0	0	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	c0011	1875	1	1	0	0	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	c0012	1875	1	1	0	0	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	c0013	1875	1	0	0	1	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	c0014	1875	1	1	0	0	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS1_chr4_107608666_107725234	0/0	c0015	1875	1	0	0	1	0	0	copy fasta	PAPSS1	chr4	107608666	107725234
PAPSS2_chr10_87654878_87752705	1/1	c0001	1860	340	86	60	150	12	30	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	c0002	1860	14	1	0	11	0	2	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	c0003	1860	5	0	0	5	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	c0004	1860	3	3	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	c0005	1860	2	0	2	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	c0006	1860	2	1	0	1	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	c0007	1860	1	0	0	1	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	c0008	1860	1	0	0	1	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	c0009	1860	1	0	0	1	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	c0010	1860	1	0	1	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	c0011	1860	1	0	1	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAPSS2_chr10_87654878_87752705	0/0	c0012	1860	1	1	0	0	0	0	copy fasta	PAPSS2	chr10	87654878	87752705
PAQR3_chr4_78906878_78944438	1/1	c0001	936	329	84	50	145	12	36	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	c0002	936	1	0	0	1	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	c0003	936	1	1	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438