JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PAQR3_chr4_78906878_78944438	0/0	c0004	936	1	0	0	0	0	1	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	c0005	936	1	1	0	0	0	0	copy fasta	PAQR3	chr4	78906878	78944438
PAQR3_chr4_78906878_78944438	0/0	c0006	936	1	0	0	0	0	1	copy fasta	PAQR3	chr4	78906878	78944438
PAQR4_chr16_2964348_2978484	1/1	c0001	822	405	93	78	177	18	37	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	c0002	822	4	4	0	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	c0003	822	1	1	0	0	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	c0004	822	1	0	0	1	0	0	copy fasta	PAQR4	chr16	2964348	2978484
PAQR4_chr16_2964348_2978484	0/0	c0005	822	1	0	0	0	0	1	copy fasta	PAQR4	chr16	2964348	2978484
PAQR5_chr15_69293912_69412780	1/1	c0001	993	195	66	31	76	6	14	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	c0002	993	60	19	10	30	0	1	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	c0003	993	27	3	1	22	0	1	copy fasta	PAQR5	chr15	69293912	69412780
PAQR5_chr15_69293912_69412780	0/0	c0004	993	2	2	0	0	0	0	copy fasta	PAQR5	chr15	69293912	69412780
PAQR6_chr1_156238320_156253056	1/1	c0001	1035	294	71	51	121	15	34	copy fasta	PAQR6	chr1	156238320	156253056
PAQR6_chr1_156238320_156253056	0/0	c0002	1035	98	13	27	46	1	11	copy fasta	PAQR6	chr1	156238320	156253056
PAQR6_chr1_156238320_156253056	0/0	c0003	1035	5	4	1	0	0	0	copy fasta	PAQR6	chr1	156238320	156253056
PAQR6_chr1_156238320_156253056	0/0	c0004	1035	1	0	0	1	0	0	copy fasta	PAQR6	chr1	156238320	156253056
PAQR6_chr1_156238320_156253056	0/0	c0005	1035	1	0	1	0	0	0	copy fasta	PAQR6	chr1	156238320	156253056
PAQR6_chr1_156238320_156253056	0/0	c0006	1035	1	0	0	0	0	1	copy fasta	PAQR6	chr1	156238320	156253056
PAQR6_chr1_156238320_156253056	0/0	c0007	1035	1	1	0	0	0	0	copy fasta	PAQR6	chr1	156238320	156253056
PAQR6_chr1_156238320_156253056	0/0	c0008	1035	1	1	0	0	0	0	copy fasta	PAQR6	chr1	156238320	156253056
PAQR7_chr1_25856484_25880708	1/1	c0001	1041	323	68	61	145	12	35	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	c0002	1041	25	22	3	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	c0003	1041	3	1	2	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	c0004	1041	2	0	0	2	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	c0005	1041	1	0	1	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	c0006	1041	1	0	1	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	c0007	1041	1	0	0	0	0	1	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	c0008	1041	1	0	0	0	0	1	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	c0009	1041	1	0	0	1	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	c0010	1041	1	0	0	0	0	1	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	c0011	1041	1	1	0	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	c0012	1041	1	1	0	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR7_chr1_25856484_25880708	0/0	c0013	1041	1	1	0	0	0	0	copy fasta	PAQR7	chr1	25856484	25880708
PAQR8_chr6_52357151_52412777	1/1	c0001	1065	307	69	52	139	13	32	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	c0002	1065	41	18	10	11	1	1	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	c0003	1065	38	1	13	14	3	7	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	c0004	1065	1	0	1	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	c0005	1065	1	1	0	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	c0006	1065	1	0	0	0	1	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR8_chr6_52357151_52412777	0/0	c0007	1065	1	1	0	0	0	0	copy fasta	PAQR8	chr6	52357151	52412777
PAQR9_chr3_142949585_142968674	1/1	c0001	1134	346	69	61	158	17	39	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	c0002	1134	64	1	7	51	0	5	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	c0003	1134	13	11	0	2	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	c0004	1134	11	10	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	c0005	1134	3	0	2	0	1	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	c0006	1134	2	1	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	c0007	1134	2	0	0	0	0	2	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	c0008	1134	1	0	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	c0009	1134	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	c0010	1134	1	0	0	1	0	0	copy fasta	PAQR9	chr3	142949585	142968674