JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PAQR9_chr3_142949585_142968674	0/0	c0011	1134	1	1	0	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PAQR9_chr3_142949585_142968674	0/0	c0012	1134	1	0	1	0	0	0	copy fasta	PAQR9	chr3	142949585	142968674
PARD3B_chr2_204540475_205625162	0/0	c0001	3618	7	5	0	2	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0002	3618	4	4	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0003	3618	4	4	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0004	3618	3	3	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0005	3618	3	3	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0006	3618	2	2	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0007	3618	2	2	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0008	3618	2	2	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0009	3618	2	1	1	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0010	3618	2	2	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0011	3618	2	2	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0012	3618	2	2	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0013	3618	2	1	1	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0014	3618	2	2	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0015	3618	2	2	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0016	3618	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0017	3618	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0018	3618	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0019	3618	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0020	3618	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0021	3618	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0022	3618	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0023	3618	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0024	3618	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0025	3618	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0026	3618	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0027	3618	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3B_chr2_204540475_205625162	0/0	c0028	3618	1	1	0	0	0	0	copy fasta	PARD3B	chr2	204540475	205625162
PARD3_chr10_34104561_34820296	0/0	c0001	4062	34	19	7	5	1	2	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0002	4062	21	12	7	0	1	1	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/1	c0003	4062	19	9	2	4	0	3	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0004	4062	6	5	1	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0005	4062	2	2	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0006	4062	2	2	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0007	4062	2	1	0	1	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0008	4062	2	2	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0009	4062	1	1	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	1/0	c0010	4062	1	0	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0011	4062	1	1	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0012	4062	1	0	1	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0013	4062	1	1	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0014	4062	1	0	0	0	1	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0015	4062	1	0	0	0	1	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0016	4062	1	1	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0017	4062	1	1	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0018	4062	1	1	0	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0019	4062	1	0	1	0	0	0	copy fasta	PARD3	chr10	34104561	34820296
PARD3_chr10_34104561_34820296	0/0	c0020	4062	1	0	1	0	0	0	copy fasta	PARD3	chr10	34104561	34820296