JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PARD6A_chr16_67655960_67667774	1/1	c0001	1038	258	85	50	78	9	34	copy fasta	PARD6A	chr16	67655960	67667774
PARD6A_chr16_67655960_67667774	0/0	c0002	1038	5	0	4	0	1	0	copy fasta	PARD6A	chr16	67655960	67667774
PARD6A_chr16_67655960_67667774	0/0	c0003	1038	2	2	0	0	0	0	copy fasta	PARD6A	chr16	67655960	67667774
PARD6A_chr16_67655960_67667774	0/0	c0004	1038	1	1	0	0	0	0	copy fasta	PARD6A	chr16	67655960	67667774
PARD6B_chr20_50726580_50758741	1/1	c0001	1119	345	80	68	141	16	38	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	c0002	1119	11	11	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	c0003	1119	4	0	0	4	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	c0004	1119	1	1	0	0	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	c0005	1119	1	0	0	0	0	1	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	c0006	1119	1	0	0	0	0	1	copy fasta	PARD6B	chr20	50726580	50758741
PARD6B_chr20_50726580_50758741	0/0	c0007	1119	1	0	0	1	0	0	copy fasta	PARD6B	chr20	50726580	50758741
PARD6G_chr18_80152232_80252514	1/1	c0001	1131	262	70	56	97	9	28	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	c0002	1131	111	19	15	66	3	8	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	c0003	1131	2	2	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	c0004	1131	2	0	0	0	0	2	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	c0005	1131	1	0	0	1	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	c0006	1131	1	1	0	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	c0007	1131	1	0	0	1	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	c0008	1131	1	0	1	0	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARD6G_chr18_80152232_80252514	0/0	c0009	1131	1	0	0	1	0	0	copy fasta	PARD6G	chr18	80152232	80252514
PARG_chr10_49813279_49947027	1/1	c0001	2931	263	67	59	106	8	21	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	c0002	2931	7	5	2	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	c0003	2931	5	5	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	c0004	2931	3	3	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	c0005	2931	2	0	0	2	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	c0006	2931	2	0	0	2	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	c0007	2931	1	0	0	1	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	c0008	2931	1	1	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	c0009	2931	1	1	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	c0010	2931	1	1	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	c0011	2931	1	1	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	c0012	2931	1	1	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	c0013	2931	1	0	0	1	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	c0014	2931	1	1	0	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	c0015	2931	1	0	1	0	0	0	copy fasta	PARG	chr10	49813279	49947027
PARG_chr10_49813279_49947027	0/0	c0016	2931	1	0	0	0	0	1	copy fasta	PARG	chr10	49813279	49947027
PARK7_chr1_7956711_7990505	1/1	c0001	570	355	80	68	153	18	34	copy fasta	PARK7	chr1	7956711	7990505
PARK7_chr1_7956711_7990505	0/0	c0002	570	14	14	0	0	0	0	copy fasta	PARK7	chr1	7956711	7990505
PARK7_chr1_7956711_7990505	0/0	c0003	570	1	0	0	1	0	0	copy fasta	PARK7	chr1	7956711	7990505
PARL_chr3_183824271_183889880	1/0	c0001	1140	199	33	33	102	9	21	copy fasta	PARL	chr3	183824271	183889880
PARL_chr3_183824271_183889880	0/1	c0002	1140	151	42	29	58	7	14	copy fasta	PARL	chr3	183824271	183889880
PARL_chr3_183824271_183889880	0/0	c0003	1140	3	3	0	0	0	0	copy fasta	PARL	chr3	183824271	183889880
PARL_chr3_183824271_183889880	0/0	c0004	1140	2	0	0	2	0	0	copy fasta	PARL	chr3	183824271	183889880
PARL_chr3_183824271_183889880	0/0	c0005	1324	1	1	0	0	0	0	copy fasta	PARL	chr3	183824271	183889880
PARL_chr3_183824271_183889880	0/0	c0006	1140	1	0	0	0	0	1	copy fasta	PARL	chr3	183824271	183889880
PARL_chr3_183824271_183889880	0/0	c0007	1140	1	1	0	0	0	0	copy fasta	PARL	chr3	183824271	183889880
PARM1_chr4_74928116_75055113	1/1	c0001	933	111	31	24	47	2	5	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	c0002	933	47	20	10	7	1	9	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	c0003	933	24	13	5	4	1	1	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	c0004	933	5	3	2	0	0	0	copy fasta	PARM1	chr4	74928116	75055113