JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PARM1_chr4_74928116_75055113	0/0	c0005	933	1	0	0	0	0	1	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	c0006	933	1	0	0	1	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	c0007	933	1	1	0	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	c0008	933	1	0	0	1	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARM1_chr4_74928116_75055113	0/0	c0009	933	1	0	1	0	0	0	copy fasta	PARM1	chr4	74928116	75055113
PARN_chr16_14430701_14635260	0/0	c0001	1920	160	53	31	45	9	22	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	c0002	1920	4	4	0	0	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	c0003	1920	1	1	0	0	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	c0004	1920	1	0	0	1	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	c0005	1920	1	0	1	0	0	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/0	c0006	1920	1	0	0	0	1	0	copy fasta	PARN	chr16	14430701	14635260
PARN_chr16_14430701_14635260	0/1	c0007	1920	1	0	0	0	0	0	copy fasta	PARN	chr16	14430701	14635260
PARP10_chr8_143972158_143991460	1/0	c0001	3078	164	5	41	97	6	14	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0002	3078	110	35	23	31	5	16	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/1	c0003	3078	35	5	14	4	2	9	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0004	3078	21	20	1	0	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0005	3078	15	13	1	0	0	1	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0006	3078	6	0	1	3	0	2	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0007	3078	5	5	0	0	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0008	3078	4	4	0	0	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0009	3078	3	3	0	0	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0010	3078	2	0	1	1	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0011	3078	2	0	0	2	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0012	3078	1	1	0	0	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0013	3078	1	0	0	0	0	1	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0014	3078	1	0	0	1	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0015	3078	1	0	0	1	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0016	3078	1	0	0	1	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0017	3078	1	0	0	0	0	1	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0018	3078	1	1	0	0	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0019	3078	1	0	0	1	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0020	3078	1	0	0	1	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0021	3078	1	0	0	1	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0022	3078	1	1	0	0	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0023	3078	1	0	0	0	1	0	copy fasta	PARP10	chr8	143972158	143991460
PARP10_chr8_143972158_143991460	0/0	c0024	3078	1	1	0	0	0	0	copy fasta	PARP10	chr8	143972158	143991460
PARP11_chr12_3803861_3878399	1/1	c0001	1017	415	92	68	199	10	44	copy fasta	PARP11	chr12	3803861	3878399
PARP11_chr12_3803861_3878399	0/0	c0002	1017	1	0	0	1	0	0	copy fasta	PARP11	chr12	3803861	3878399
PARP12_chr7_140018749_140067951	1/0	c0001	2106	144	15	28	62	9	29	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	c0002	2106	127	29	24	67	3	4	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	c0003	2106	22	19	2	0	0	1	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	c0004	2106	19	5	5	0	1	8	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	c0005	2106	12	11	1	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	c0006	2106	8	0	0	8	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	c0007	2106	7	7	0	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/1	c0008	2106	5	0	3	0	0	1	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	c0009	2106	4	0	4	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	c0010	2106	3	1	1	0	1	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	c0011	2106	2	2	0	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	c0012	2106	1	0	0	1	0	0	copy fasta	PARP12	chr7	140018749	140067951