JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PARP12_chr7_140018749_140067951	0/0	c0013	2106	1	0	0	0	0	1	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	c0014	2106	1	0	1	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	c0015	2106	1	1	0	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	c0016	2106	1	1	0	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	c0017	2106	1	1	0	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP12_chr7_140018749_140067951	0/0	c0018	2106	1	0	1	0	0	0	copy fasta	PARP12	chr7	140018749	140067951
PARP14_chr3_122675839_122735840	0/1	c0001	5406	262	60	33	115	11	42	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0002	5406	35	4	4	24	0	3	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	1/0	c0003	5406	19	7	7	3	1	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0004	5406	9	2	6	0	1	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0005	5406	6	0	1	5	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0006	5406	4	3	1	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0007	5406	4	1	3	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0008	5406	3	0	3	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0009	5406	3	3	0	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0010	5406	3	2	1	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0011	5406	2	2	0	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0012	5406	2	0	0	2	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0013	5406	1	0	0	1	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0014	5406	1	0	1	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0015	5406	1	1	0	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0016	5406	1	0	0	0	1	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0017	5406	1	0	1	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0018	5406	1	1	0	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0019	5406	1	1	0	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0020	5406	1	0	0	1	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0021	5406	1	0	0	0	0	1	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0022	5406	1	0	0	1	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0023	5406	1	1	0	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0024	5406	1	0	0	0	0	1	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0025	5406	1	0	0	0	0	1	copy fasta	PARP14	chr3	122675839	122735840
PARP14_chr3_122675839_122735840	0/0	c0026	5406	1	0	1	0	0	0	copy fasta	PARP14	chr3	122675839	122735840
PARP15_chr3_122572650_122644047	1/0	c0001	2037	89	16	18	24	9	21	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0002	2037	42	0	6	31	2	3	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/1	c0003	2037	41	8	12	15	1	4	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0004	2037	40	1	3	29	1	6	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0005	2037	29	4	7	9	1	8	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0006	2037	22	1	2	17	0	2	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0007	2037	12	9	0	3	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0008	2037	12	0	10	0	1	1	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0009	2037	7	7	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0010	2037	6	3	0	3	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0011	2037	4	4	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0012	2037	4	4	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0013	2037	4	4	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0014	2037	3	3	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0015	2037	3	3	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0016	2037	3	1	2	0	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0017	2037	3	1	1	1	0	0	copy fasta	PARP15	chr3	122572650	122644047
PARP15_chr3_122572650_122644047	0/0	c0018	2037	2	2	0	0	0	0	copy fasta	PARP15	chr3	122572650	122644047