JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PARP1_chr1_226355691_226413093	0/0	c0015	3045	1	0	0	1	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	c0016	3045	1	0	0	0	1	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	c0017	3045	1	1	0	0	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	1/0	c0018	3045	1	0	0	0	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	c0019	3045	1	0	0	1	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	c0020	3045	1	0	0	1	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	c0021	3045	1	0	1	0	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	c0022	3045	1	0	0	1	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	c0023	3045	1	0	0	1	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP1_chr1_226355691_226413093	0/0	c0024	3045	1	0	1	0	0	0	copy fasta	PARP1	chr1	226355691	226413093
PARP2_chr14_20338635_20362904	0/0	c0001	1713	203	25	42	112	5	19	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	1/0	c0002	1713	173	51	23	72	5	21	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/1	c0003	1713	9	2	4	0	1	1	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	c0004	1713	9	8	0	0	0	1	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	c0005	1713	4	3	1	0	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	c0006	1713	4	0	0	4	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	c0007	1713	3	0	0	3	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	c0008	1713	3	3	0	0	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	c0009	1713	3	0	0	3	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	c0010	1713	2	2	0	0	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	c0011	1713	2	2	0	0	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	c0012	1713	1	0	0	1	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	c0013	1713	1	0	1	0	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	c0014	1713	1	0	1	0	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	c0015	1713	1	0	0	1	0	0	copy fasta	PARP2	chr14	20338635	20362904
PARP2_chr14_20338635_20362904	0/0	c0016	1713	1	0	0	0	1	0	copy fasta	PARP2	chr14	20338635	20362904
PARP3_chr3_51937363_51953867	1/1	c0001	1602	299	49	68	141	8	31	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0002	1602	14	0	1	12	0	1	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0003	1602	13	0	0	13	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0004	1602	12	12	0	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0005	1602	10	6	4	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0006	1602	10	9	1	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0007	1602	8	8	0	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0008	1602	5	0	0	4	0	1	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0009	1602	1	0	1	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0010	1602	1	0	0	1	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0011	1602	1	1	0	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0012	1602	1	0	0	0	0	1	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0013	1602	1	1	0	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0014	1602	1	0	0	1	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0015	1602	1	0	0	1	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0016	1602	1	0	1	0	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP3_chr3_51937363_51953867	0/0	c0017	1602	1	0	0	1	0	0	copy fasta	PARP3	chr3	51937363	51953867
PARP4_chr13_24415931_24517778	0/0	c0001	5175	94	9	25	44	6	10	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/1	c0002	5175	75	9	19	34	4	8	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	c0003	5175	47	4	5	35	0	3	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	1/0	c0004	5175	17	10	0	4	1	1	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	c0005	5175	12	12	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	c0006	5175	7	0	5	0	2	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	c0007	5175	7	0	0	5	0	2	copy fasta	PARP4	chr13	24415931	24517778