JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PARP4_chr13_24415931_24517778	0/0	c0058	5175	1	0	1	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	c0059	5175	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	c0060	5175	1	1	0	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP4_chr13_24415931_24517778	0/0	c0061	5175	1	0	1	0	0	0	copy fasta	PARP4	chr13	24415931	24517778
PARP6_chr15_72236181_72277554	1/1	c0001	1893	382	87	71	186	8	28	copy fasta	PARP6	chr15	72236181	72277554
PARP6_chr15_72236181_72277554	0/0	c0002	1893	8	8	0	0	0	0	copy fasta	PARP6	chr15	72236181	72277554
PARP6_chr15_72236181_72277554	0/0	c0003	1893	3	3	0	0	0	0	copy fasta	PARP6	chr15	72236181	72277554
PARP6_chr15_72236181_72277554	0/0	c0004	1893	1	0	1	0	0	0	copy fasta	PARP6	chr15	72236181	72277554
PARP6_chr15_72236181_72277554	0/0	c0005	1893	1	0	0	1	0	0	copy fasta	PARP6	chr15	72236181	72277554
PARP6_chr15_72236181_72277554	0/0	c0006	1893	1	0	0	1	0	0	copy fasta	PARP6	chr15	72236181	72277554
PARP8_chr5_50661637_50851519	1/1	c0001	2565	147	62	24	39	5	15	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	c0002	2565	111	14	20	56	3	18	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	c0003	2565	47	5	10	24	0	8	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	c0004	2565	7	6	1	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	c0005	2565	6	0	0	6	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	c0006	2565	2	0	0	2	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	c0007	2565	2	2	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	c0008	2565	1	0	0	1	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	c0009	2565	1	0	1	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	c0010	2565	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	c0011	2565	1	0	0	0	0	1	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	c0012	2565	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP8_chr5_50661637_50851519	0/0	c0013	2565	1	1	0	0	0	0	copy fasta	PARP8	chr5	50661637	50851519
PARP9_chr3_122522924_122569300	1/0	c0001	2460	181	59	37	63	6	15	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	c0002	2460	106	7	21	60	4	14	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/1	c0003	2460	96	16	9	57	4	9	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	c0004	2460	34	6	10	11	2	5	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	c0005	2460	6	6	0	0	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	c0006	2460	3	2	1	0	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	c0007	2460	3	0	0	3	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	c0008	2460	1	1	0	0	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	c0009	2446	1	0	0	1	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	c0010	2460	1	0	0	1	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	c0011	2460	1	0	0	1	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	c0012	2460	1	1	0	0	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	c0013	2460	1	0	0	1	0	0	copy fasta	PARP9	chr3	122522924	122569300
PARP9_chr3_122522924_122569300	0/0	c0014	2460	1	0	0	0	0	1	copy fasta	PARP9	chr3	122522924	122569300
PARPBP_chr12_102115183_102202520	1/1	c0001	1740	155	68	29	39	4	13	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	c0002	1740	78	15	7	49	3	4	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	c0003	1740	62	0	12	45	0	5	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	c0004	1740	35	1	7	23	0	4	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	c0005	1740	6	5	0	0	1	0	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	c0006	1740	4	4	0	0	0	0	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	c0007	1740	2	0	0	2	0	0	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	c0008	1740	1	1	0	0	0	0	copy fasta	PARPBP	chr12	102115183	102202520
PARPBP_chr12_102115183_102202520	0/0	c0009	1740	1	0	1	0	0	0	copy fasta	PARPBP	chr12	102115183	102202520
PARS2_chr1_54751898_54769523	1/1	c0001	1428	344	74	61	156	18	33	copy fasta	PARS2	chr1	54751898	54769523
PARS2_chr1_54751898_54769523	0/0	c0002	1428	57	5	8	36	0	8	copy fasta	PARS2	chr1	54751898	54769523
PARS2_chr1_54751898_54769523	0/0	c0003	1428	5	4	1	0	0	0	copy fasta	PARS2	chr1	54751898	54769523
PARS2_chr1_54751898_54769523	0/0	c0004	1428	2	0	0	2	0	0	copy fasta	PARS2	chr1	54751898	54769523