JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PARS2_chr1_54751898_54769523	0/0	c0005	1428	2	2	0	0	0	0	copy fasta	PARS2	chr1	54751898	54769523
PARS2_chr1_54751898_54769523	0/0	c0006	1428	1	1	0	0	0	0	copy fasta	PARS2	chr1	54751898	54769523
PARS2_chr1_54751898_54769523	0/0	c0007	1428	1	0	0	0	0	1	copy fasta	PARS2	chr1	54751898	54769523
PARVA_chr11_12372571_12540356	1/1	c0001	1119	236	72	45	82	7	28	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	c0002	1119	43	17	5	17	2	2	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	c0003	1119	1	0	1	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	c0004	1119	1	0	0	0	1	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	c0005	1119	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	c0006	1119	1	1	0	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	c0007	1119	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	c0008	1119	1	0	0	1	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVA_chr11_12372571_12540356	0/0	c0009	1119	1	0	1	0	0	0	copy fasta	PARVA	chr11	12372571	12540356
PARVB_chr22_44019302_44177939	0/0	c0001	1095	193	35	36	88	7	27	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/1	c0002	1095	63	21	15	14	7	5	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	1/0	c0003	1095	22	2	7	1	2	9	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0004	1095	7	0	0	6	0	1	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0005	1095	7	5	2	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0006	1095	7	6	1	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0007	1095	3	3	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0008	1095	2	2	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0009	1095	2	0	0	2	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0010	1095	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0011	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0012	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0013	1095	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0014	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0015	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0016	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0017	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0018	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0019	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0020	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0021	1095	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0022	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0023	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0024	1095	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0025	1095	1	0	1	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0026	1095	1	0	0	0	0	1	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0027	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0028	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0029	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0030	1095	1	0	0	1	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0031	1095	1	0	1	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0032	1095	1	0	1	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0033	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0034	1095	1	1	0	0	0	0	copy fasta	PARVB	chr22	44019302	44177939
PARVB_chr22_44019302_44177939	0/0	c0035	1095	1	0	0	0	0	1	copy fasta	PARVB	chr22	44019302	44177939
PARVG_chr22_44175925_44213469	0/1	c0001	996	207	66	39	69	9	23	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	1/0	c0002	996	135	15	20	82	3	14	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	c0003	996	31	2	9	13	3	4	copy fasta	PARVG	chr22	44175925	44213469