JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PARVG_chr22_44175925_44213469	0/0	c0004	996	25	1	2	19	2	1	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	c0005	996	13	5	3	3	0	2	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	c0006	996	3	3	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	c0007	996	2	2	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	c0008	996	1	0	0	0	0	1	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	c0009	996	1	1	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	c0010	996	1	1	0	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	c0011	996	1	0	0	0	0	1	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	c0012	996	1	0	1	0	0	0	copy fasta	PARVG	chr22	44175925	44213469
PARVG_chr22_44175925_44213469	0/0	c0013	996	1	0	0	0	1	0	copy fasta	PARVG	chr22	44175925	44213469
PASD1_chrX_151558675_151681739	0/0	c0001	2322	88	6	12	56	2	12	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	1/1	c0002	2322	70	49	15	1	3	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0003	2322	17	6	4	4	0	3	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0004	2322	9	0	7	0	1	1	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0005	2322	3	0	0	1	0	2	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0006	2322	3	3	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0007	2322	3	0	1	1	0	1	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0008	2322	3	0	2	1	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0009	2322	3	0	1	0	0	2	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0010	2322	2	2	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0011	2322	2	2	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0012	2301	2	0	2	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0013	2322	2	2	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0014	2322	2	0	0	2	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0015	2322	2	1	0	1	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0016	2322	1	0	0	1	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0017	2322	1	1	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0018	2322	1	0	0	1	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0019	2301	1	0	0	0	0	1	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0020	2322	1	0	1	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0021	2301	1	0	1	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0022	2321	1	0	0	1	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0023	2322	1	1	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0024	2322	1	0	0	1	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASD1_chrX_151558675_151681739	0/0	c0025	2322	1	1	0	0	0	0	copy fasta	PASD1	chrX	151558675	151681739
PASK_chr2_241101099_241154472	1/0	c0001	3972	52	7	16	12	4	12	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0002	3972	42	4	7	27	0	4	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0003	3972	29	0	7	21	0	1	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0004	3972	22	0	1	21	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0005	3972	20	0	4	12	2	2	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/1	c0006	3972	20	3	3	7	2	4	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0007	3972	20	1	5	13	0	1	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0008	3972	10	0	0	10	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0009	3972	10	9	1	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0010	3972	9	9	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0011	3972	9	3	2	0	2	2	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0012	3972	9	6	2	0	1	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0013	3972	9	0	4	4	1	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0014	3972	9	0	0	1	0	8	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0015	3972	9	0	1	8	0	0	copy fasta	PASK	chr2	241101099	241154472