JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PASK_chr2_241101099_241154472	0/0	c0066	3972	1	1	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0067	3972	1	0	0	1	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0068	3972	1	0	0	1	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0069	3972	1	1	0	0	0	0	copy fasta	PASK	chr2	241101099	241154472
PASK_chr2_241101099_241154472	0/0	c0070	3972	1	0	0	1	0	0	copy fasta	PASK	chr2	241101099	241154472
PATE1_chr11_125741279_125754867	1/0	c0001	381	168	32	37	82	4	12	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/1	c0002	381	148	29	13	86	4	15	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	c0003	381	111	25	24	48	2	12	copy fasta	PATE1	chr11	125741279	125754867
PATE1_chr11_125741279_125754867	0/0	c0004	381	7	6	0	0	0	1	copy fasta	PATE1	chr11	125741279	125754867
PATE2_chr11_125771113_125783828	1/1	c0001	342	399	83	65	206	11	32	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	c0002	342	15	7	3	0	1	4	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	c0003	342	1	0	0	0	0	1	copy fasta	PATE2	chr11	125771113	125783828
PATE2_chr11_125771113_125783828	0/0	c0004	342	1	0	0	0	0	1	copy fasta	PATE2	chr11	125771113	125783828
PATE3_chr11_125783127_125796600	1/1	c0001	297	396	76	60	209	11	38	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	0/0	c0002	297	27	16	6	0	1	4	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	0/0	c0003	297	2	0	2	0	0	0	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	0/0	c0004	297	2	0	0	2	0	0	copy fasta	PATE3	chr11	125783127	125796600
PATE3_chr11_125783127_125796600	0/0	c0005	297	1	0	0	1	0	0	copy fasta	PATE3	chr11	125783127	125796600
PATE4_chr11_125828316_125845072	1/1	c0001	297	353	91	58	158	11	33	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	c0002	297	67	3	14	40	1	9	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	c0003	297	2	2	0	0	0	0	copy fasta	PATE4	chr11	125828316	125845072
PATE4_chr11_125828316_125845072	0/0	c0004	297	2	0	0	0	0	2	copy fasta	PATE4	chr11	125828316	125845072
PATJ_chr1_61737480_62168915	0/0	c0001	5649	4	4	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0002	5649	3	0	2	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0003	5649	3	1	1	0	1	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0004	5649	2	2	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0005	5649	2	1	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0006	5649	2	1	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0007	5649	2	0	1	0	1	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0008	5649	2	0	1	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0009	5649	2	0	0	2	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0010	5649	2	0	1	0	1	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0011	5649	2	0	0	0	0	2	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0012	5649	2	2	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0013	5649	2	0	2	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0014	5649	2	0	0	0	0	2	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0015	5649	2	0	1	0	1	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0016	5649	2	0	1	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0017	5649	2	0	2	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0018	5649	2	0	1	0	1	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0019	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0020	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0021	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0022	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0023	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0024	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0025	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0026	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0027	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0028	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915