JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PATJ_chr1_61737480_62168915	0/0	c0029	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0030	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0031	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0032	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0033	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0034	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0035	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0036	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0037	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	1/0	c0038	5649	1	0	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0039	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0040	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0041	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0042	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0043	5649	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0044	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0045	5649	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0046	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0047	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0048	5649	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0049	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0050	5649	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0051	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0052	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0053	5649	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0054	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0055	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0056	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0057	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0058	5649	1	0	0	0	1	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0059	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0060	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0061	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0062	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0063	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0064	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0065	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0066	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0067	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0068	5649	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0069	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0070	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0071	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0072	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0073	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0074	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0075	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0076	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0077	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0078	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915