JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PATJ_chr1_61737480_62168915	0/0	c0079	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0080	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0081	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0082	5649	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0083	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0084	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0085	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0086	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0087	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0088	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0089	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0090	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0091	5649	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0092	5649	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0093	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0094	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0095	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0096	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0097	5649	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0098	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0099	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0100	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0101	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0102	5649	1	0	0	0	1	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0103	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0104	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0105	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0106	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0107	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0108	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0109	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0110	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0111	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0112	5649	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0113	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0114	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0115	5649	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0116	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/1	c0117	5649	1	0	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0118	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0119	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0120	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0121	5649	1	0	0	0	0	1	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0122	5649	1	0	0	0	1	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0123	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0124	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0125	5649	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0126	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0127	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0128	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915