JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PATJ_chr1_61737480_62168915	0/0	c0129	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0130	5649	1	0	0	1	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0131	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0132	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0133	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0134	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0135	5649	1	1	0	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATJ_chr1_61737480_62168915	0/0	c0136	5649	1	0	1	0	0	0	copy fasta	PATJ	chr1	61737480	62168915
PATL1_chr11_59631716_59674037	1/1	c0001	2313	259	69	53	121	0	14	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	c0002	2313	4	3	1	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	c0003	2313	3	3	0	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	c0004	2313	3	0	2	1	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	c0005	2313	2	2	0	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	c0006	2313	1	0	1	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	c0007	2313	1	0	1	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	c0008	2313	1	1	0	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	c0009	2313	1	1	0	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL1_chr11_59631716_59674037	0/0	c0010	2313	1	1	0	0	0	0	copy fasta	PATL1	chr11	59631716	59674037
PATL2_chr15_44660732_44716323	0/1	c0001	1632	209	42	39	89	9	29	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	c0002	1632	30	16	0	14	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	c0003	1632	8	7	1	0	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	c0004	1632	2	2	0	0	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	1/0	c0005	1632	2	1	0	0	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	c0006	1632	2	2	0	0	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	c0007	1632	2	2	0	0	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	c0008	1632	2	0	0	0	1	1	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	c0009	1620	1	1	0	0	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	c0010	1632	1	1	0	0	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	c0011	1632	1	0	0	1	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	c0012	1632	1	1	0	0	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATL2_chr15_44660732_44716323	0/0	c0013	1632	1	1	0	0	0	0	copy fasta	PATL2	chr15	44660732	44716323
PATZ1_chr22_31320804_31351346	1/1	c0001	2064	220	67	32	76	8	35	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	c0002	2064	81	7	12	62	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	c0003	2064	59	1	27	21	6	4	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	c0004	2065	6	0	0	6	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	c0005	2065	5	0	1	3	0	1	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	c0006	2064	5	5	0	0	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	c0007	2065	4	1	0	3	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	c0008	2066	1	0	0	1	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	c0009	2065	1	0	0	0	0	1	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	c0010	2064	1	0	0	0	0	1	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	c0011	2064	1	1	0	0	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	c0012	2064	1	0	0	1	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PATZ1_chr22_31320804_31351346	0/0	c0013	2048	1	0	0	1	0	0	copy fasta	PATZ1	chr22	31320804	31351346
PAWR_chr12_79579879_79695964	0/1	c0001	1023	107	16	25	53	2	10	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	c0002	1023	82	36	8	31	0	7	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	1/0	c0003	1023	49	1	8	31	0	8	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	c0004	1023	8	5	2	1	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	c0005	1023	3	3	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	c0006	1023	3	3	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964