JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PAWR_chr12_79579879_79695964	0/0	c0007	1023	2	2	0	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	c0008	1023	1	0	1	0	0	0	copy fasta	PAWR	chr12	79579879	79695964
PAWR_chr12_79579879_79695964	0/0	c0009	1023	1	0	0	0	0	1	copy fasta	PAWR	chr12	79579879	79695964
PAX1_chr20_21700664_21723481	1/1	c0001	1374	339	78	60	142	18	39	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	c0002	1374	43	9	6	27	0	1	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	c0003	1374	3	1	2	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	c0004	1374	2	2	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	c0005	1374	2	2	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	c0006	1374	2	0	0	2	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	c0007	1374	1	0	0	1	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	c0008	1374	1	1	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	c0009	1374	1	0	0	1	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	c0010	1374	1	1	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	c0011	1374	1	0	0	1	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	c0012	1374	1	1	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	c0013	1374	1	1	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	c0014	1374	1	1	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX1_chr20_21700664_21723481	0/0	c0015	1374	1	1	0	0	0	0	copy fasta	PAX1	chr20	21700664	21723481
PAX2_chr10_100740582_100834944	1/0	c0001	1185	105	18	27	29	7	23	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/1	c0002	1185	72	41	17	0	2	11	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	c0003	1185	49	29	3	12	1	4	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	c0004	1185	2	1	1	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	c0005	1185	2	2	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	c0006	1185	1	0	0	1	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX2_chr10_100740582_100834944	0/0	c0007	1185	1	1	0	0	0	0	copy fasta	PAX2	chr10	100740582	100834944
PAX3_chr2_222194887_222303998	0/1	c0001	1455	284	64	49	124	12	34	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	1/0	c0002	1455	27	11	8	0	4	3	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	c0003	1455	6	4	2	0	0	0	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	c0004	1455	2	0	1	0	0	1	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	c0005	1455	2	0	0	0	0	2	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	c0006	1455	2	2	0	0	0	0	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	c0007	1455	2	0	0	2	0	0	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	c0008	1455	1	1	0	0	0	0	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	c0009	1455	1	0	0	1	0	0	copy fasta	PAX3	chr2	222194887	222303998
PAX3_chr2_222194887_222303998	0/0	c0010	1455	1	0	0	1	0	0	copy fasta	PAX3	chr2	222194887	222303998
PAX4_chr7_127605292_127623142	0/1	c0001	1056	224	59	54	66	13	31	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	1/0	c0002	1056	128	15	16	78	5	13	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	c0003	1056	25	16	3	6	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	c0004	1056	17	0	0	17	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	c0005	1056	8	0	1	7	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	c0006	1056	8	0	0	8	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	c0007	1056	6	5	1	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	c0008	1056	2	0	0	2	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	c0009	1056	1	0	0	1	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	c0010	1056	1	1	0	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	c0011	1056	1	0	0	1	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	c0012	1056	1	0	0	1	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	c0013	1056	1	0	0	0	0	1	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	c0014	1056	1	0	0	1	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	c0015	1056	1	0	1	0	0	0	copy fasta	PAX4	chr7	127605292	127623142