JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PAX4_chr7_127605292_127623142	0/0	c0016	1056	1	0	0	0	0	1	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	c0017	1056	1	1	0	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX4_chr7_127605292_127623142	0/0	c0018	1056	1	1	0	0	0	0	copy fasta	PAX4	chr7	127605292	127623142
PAX5_chr9_36828269_37039268	0/1	c0001	1176	174	24	41	71	10	27	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	1/0	c0002	1176	87	61	9	13	0	3	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	c0003	1176	3	0	0	3	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	c0004	1176	3	0	1	0	0	2	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	c0005	1176	2	2	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	c0006	1176	2	2	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	c0007	1176	1	1	0	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	c0008	1176	1	0	1	0	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX5_chr9_36828269_37039268	0/0	c0009	1176	1	0	0	1	0	0	copy fasta	PAX5	chr9	36828269	37039268
PAX6_chr11_31784026_31816322	1/1	c0001	1311	371	85	69	161	12	42	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/0	c0002	1311	3	3	0	0	0	0	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/0	c0003	1311	1	0	1	0	0	0	copy fasta	PAX6	chr11	31784026	31816322
PAX6_chr11_31784026_31816322	0/0	c0004	1311	1	0	0	1	0	0	copy fasta	PAX6	chr11	31784026	31816322
PAX7_chr1_18625846_18753866	1/1	c0001	1518	138	39	35	40	5	17	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0002	1518	107	46	19	33	1	8	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0003	1518	39	0	6	26	0	7	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0004	1518	4	0	0	0	0	4	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0005	1518	2	1	1	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0006	1518	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0007	1518	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0008	1518	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0009	1518	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0010	1518	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0011	1518	1	0	1	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0012	1518	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0013	1518	1	0	1	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0014	1518	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0015	1518	1	0	0	1	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0016	1518	1	0	1	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX7_chr1_18625846_18753866	0/0	c0017	1518	1	1	0	0	0	0	copy fasta	PAX7	chr1	18625846	18753866
PAX8_chr2_113210997_113283921	1/1	c0001	1353	286	86	53	109	9	27	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	c0002	1353	4	0	0	4	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	c0003	1353	3	3	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	c0004	1353	1	0	0	0	0	1	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	c0005	1353	1	0	0	1	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	c0006	1353	1	0	0	1	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	c0007	1353	1	0	1	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	c0008	1353	1	0	0	0	1	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	c0009	1353	1	0	0	1	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX8_chr2_113210997_113283921	0/0	c0010	1353	1	1	0	0	0	0	copy fasta	PAX8	chr2	113210997	113283921
PAX9_chr14_36656860_36684362	1/0	c0001	1026	193	68	42	56	6	20	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	c0002	1026	153	17	23	87	5	21	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/1	c0003	1026	90	2	9	66	5	7	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	c0004	1026	4	3	1	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	c0005	1026	3	1	0	0	2	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	c0006	1026	1	1	0	0	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAX9_chr14_36656860_36684362	0/0	c0007	1026	1	0	1	0	0	0	copy fasta	PAX9	chr14	36656860	36684362