JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PAX9_chr14_36656860_36684362	0/0	c0008	1026	1	0	0	1	0	0	copy fasta	PAX9	chr14	36656860	36684362
PAXBP1_chr21_32728899_32776755	1/1	c0001	2754	333	70	54	154	12	41	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	c0002	2754	6	6	0	0	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	c0003	2754	5	5	0	0	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	c0004	2754	5	5	0	0	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	c0005	2754	3	2	0	1	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	c0006	2754	3	3	0	0	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	c0007	2754	1	1	0	0	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	c0008	2754	1	1	0	0	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	c0009	2754	1	0	0	1	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	c0010	2754	1	0	0	0	0	1	copy fasta	PAXBP1	chr21	32728899	32776755
PAXBP1_chr21_32728899_32776755	0/0	c0011	2754	1	1	0	0	0	0	copy fasta	PAXBP1	chr21	32728899	32776755
PAXIP1_chr7_154938690_155008124	1/1	c0001	3210	129	33	19	61	4	10	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0002	3210	110	24	15	53	4	14	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0003	3210	85	3	17	50	2	13	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0004	3210	8	4	3	0	0	1	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0005	3210	7	7	0	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0006	3213	7	5	2	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0007	3210	4	3	1	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0008	3210	2	2	0	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0009	3210	1	1	0	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0010	3210	1	0	1	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0011	3210	1	1	0	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0012	3210	1	0	0	1	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0013	3210	1	0	1	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0014	3210	1	1	0	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0015	3210	1	0	0	1	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0016	3210	1	0	0	1	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0017	3210	1	0	1	0	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXIP1_chr7_154938690_155008124	0/0	c0018	3210	1	0	0	1	0	0	copy fasta	PAXIP1	chr7	154938690	155008124
PAXX_chr9_136987422_136998976	1/1	c0001	615	366	79	73	159	11	42	copy fasta	PAXX	chr9	136987422	136998976
PAXX_chr9_136987422_136998976	0/0	c0002	615	12	11	1	0	0	0	copy fasta	PAXX	chr9	136987422	136998976
PAXX_chr9_136987422_136998976	0/0	c0003	615	1	0	0	0	0	1	copy fasta	PAXX	chr9	136987422	136998976
PAXX_chr9_136987422_136998976	0/0	c0004	615	1	0	0	0	1	0	copy fasta	PAXX	chr9	136987422	136998976
PAXX_chr9_136987422_136998976	0/0	c0005	615	1	1	0	0	0	0	copy fasta	PAXX	chr9	136987422	136998976
PAXX_chr9_136987422_136998976	0/0	c0006	615	1	0	0	1	0	0	copy fasta	PAXX	chr9	136987422	136998976
PAXX_chr9_136987422_136998976	0/0	c0007	615	1	1	0	0	0	0	copy fasta	PAXX	chr9	136987422	136998976
PAXX_chr9_136987422_136998976	0/0	c0008	615	1	0	0	0	0	1	copy fasta	PAXX	chr9	136987422	136998976
PBDC1_chrX_76168062_76183314	1/1	c0001	702	288	72	46	128	11	29	copy fasta	PBDC1	chrX	76168062	76183314
PBDC1_chrX_76168062_76183314	0/0	c0002	702	2	0	0	0	0	2	copy fasta	PBDC1	chrX	76168062	76183314
PBDC1_chrX_76168062_76183314	0/0	c0003	703	1	0	0	1	0	0	copy fasta	PBDC1	chrX	76168062	76183314
PBDC1_chrX_76168062_76183314	0/0	c0004	702	1	0	0	1	0	0	copy fasta	PBDC1	chrX	76168062	76183314
PBDC1_chrX_76168062_76183314	0/0	c0005	702	1	1	0	0	0	0	copy fasta	PBDC1	chrX	76168062	76183314
PBK_chr8_27804624_27842817	1/0	c0001	969	183	43	27	84	6	22	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	c0002	969	103	16	10	70	1	6	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	c0003	969	62	9	26	13	3	11	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	c0004	969	12	11	1	0	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	c0005	969	9	0	0	9	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	c0006	969	8	7	1	0	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/1	c0007	969	4	3	0	0	0	0	copy fasta	PBK	chr8	27804624	27842817