JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PBK_chr8_27804624_27842817	0/0	c0008	969	4	4	0	0	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	c0009	969	3	0	0	0	0	3	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	c0010	969	1	1	0	0	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	c0011	969	1	0	0	1	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	c0012	969	1	0	0	1	0	0	copy fasta	PBK	chr8	27804624	27842817
PBK_chr8_27804624_27842817	0/0	c0013	969	1	0	1	0	0	0	copy fasta	PBK	chr8	27804624	27842817
PBLD_chr10_68277660_68337928	0/1	c0001	867	211	33	37	107	12	21	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	c0002	867	70	17	10	25	1	17	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	c0003	867	56	15	8	28	1	4	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	1/0	c0004	867	15	13	1	0	0	0	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	c0005	867	5	4	0	0	0	1	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	c0006	867	3	3	0	0	0	0	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	c0007	867	2	0	1	0	0	1	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	c0008	867	1	0	1	0	0	0	copy fasta	PBLD	chr10	68277660	68337928
PBLD_chr10_68277660_68337928	0/0	c0009	867	1	1	0	0	0	0	copy fasta	PBLD	chr10	68277660	68337928
PBOV1_chr6_138210986_138223491	1/0	c0001	408	281	71	50	112	9	38	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/1	c0002	409	84	10	10	60	1	2	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	c0003	408	12	12	0	0	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	c0004	409	6	0	0	6	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBOV1_chr6_138210986_138223491	0/0	c0005	408	1	1	0	0	0	0	copy fasta	PBOV1	chr6	138210986	138223491
PBRM1_chr3_52540367_52690913	1/1	c0001	5115	144	29	33	58	11	11	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	c0002	5115	100	9	24	57	4	6	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	c0003	5115	25	17	5	0	1	2	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	c0004	5115	21	21	0	0	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	c0005	5115	3	3	0	0	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	c0006	5115	1	1	0	0	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	c0007	5115	1	1	0	0	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	c0008	5115	1	0	0	0	0	1	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	c0009	5115	1	1	0	0	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	c0010	5115	1	0	0	1	0	0	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	c0011	5115	1	0	0	0	0	1	copy fasta	PBRM1	chr3	52540367	52690913
PBRM1_chr3_52540367_52690913	0/0	c0012	5115	1	0	0	0	0	1	copy fasta	PBRM1	chr3	52540367	52690913
PBX1_chr1_164554184_164856831	0/0	c0001	1293	124	66	23	17	3	15	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	c0002	1293	59	0	17	37	0	5	copy fasta	PBX1	chr1	164554184	164856831
PBX1_chr1_164554184_164856831	0/0	c0003	1293	1	0	0	0	1	0	copy fasta	PBX1	chr1	164554184	164856831
PBX2_chr6_32179733_32195202	0/1	c0001	1293	369	72	66	179	14	37	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	c0002	1293	54	20	9	16	2	7	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	c0003	1293	9	0	4	5	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	c0004	1293	2	2	0	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX2_chr6_32179733_32195202	0/0	c0005	1293	1	0	1	0	0	0	copy fasta	PBX2	chr6	32179733	32195202
PBX3_chr9_125742373_125972377	1/1	c0001	1305	256	83	40	98	10	23	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	c0002	1305	34	0	5	27	0	2	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	c0003	1305	1	1	0	0	0	0	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	c0004	1305	1	0	0	0	0	1	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	c0005	1305	1	0	0	1	0	0	copy fasta	PBX3	chr9	125742373	125972377
PBX3_chr9_125742373_125972377	0/0	c0006	1305	1	0	1	0	0	0	copy fasta	PBX3	chr9	125742373	125972377
PBX4_chr19_19556713_19623687	1/1	c0001	1125	367	70	75	161	16	43	copy fasta	PBX4	chr19	19556713	19623687
PBX4_chr19_19556713_19623687	0/0	c0002	1125	3	0	0	0	0	3	copy fasta	PBX4	chr19	19556713	19623687
PBX4_chr19_19556713_19623687	0/0	c0003	1125	2	2	0	0	0	0	copy fasta	PBX4	chr19	19556713	19623687
PBX4_chr19_19556713_19623687	0/0	c0004	1105	1	0	0	1	0	0	copy fasta	PBX4	chr19	19556713	19623687