JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PBX4_chr19_19556713_19623687	0/0	c0005	1125	1	1	0	0	0	0	copy fasta	PBX4	chr19	19556713	19623687
PBX4_chr19_19556713_19623687	0/0	c0006	1125	1	0	1	0	0	0	copy fasta	PBX4	chr19	19556713	19623687
PBX4_chr19_19556713_19623687	0/0	c0007	1125	1	1	0	0	0	0	copy fasta	PBX4	chr19	19556713	19623687
PBXIP1_chr1_154939080_154961099	0/0	c0001	2196	146	13	31	78	5	19	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	c0002	2196	109	62	21	12	8	6	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	c0003	2196	9	9	0	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	c0004	2196	6	0	3	0	3	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	c0005	2196	5	0	0	5	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	c0006	2196	3	3	0	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	c0007	2196	1	1	0	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	c0008	2196	1	0	0	0	0	1	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	c0009	2184	1	0	0	1	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	c0010	2196	1	0	0	0	0	1	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	c0011	2196	1	0	0	0	0	1	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	c0012	2196	1	1	0	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	c0013	2196	1	1	0	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PBXIP1_chr1_154939080_154961099	0/0	c0014	1735	1	0	1	0	0	0	copy fasta	PBXIP1	chr1	154939080	154961099
PCARE_chr2_29056695_29079523	1/1	c0001	3867	212	28	42	101	13	26	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0002	3870	68	0	4	60	0	4	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0003	3870	38	1	10	21	3	3	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0004	3870	26	11	2	13	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0005	3870	14	13	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0006	3867	12	0	9	0	0	3	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0007	3870	8	0	0	8	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0008	3870	6	0	0	6	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0009	3867	5	5	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0010	3870	5	3	0	2	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0011	3867	4	2	2	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0012	3870	4	3	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0013	3870	4	0	0	4	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0014	3867	3	0	0	1	0	2	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0015	3867	3	3	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0016	3870	3	3	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0017	3867	2	2	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0018	3867	2	0	0	1	0	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0019	3870	2	0	0	2	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0020	3870	2	1	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0021	3867	2	2	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0022	3867	2	0	1	1	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0023	3867	2	2	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0024	3870	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0025	3867	1	0	0	1	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0026	3867	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0027	3870	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0028	3870	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0029	3877	1	0	0	1	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0030	3867	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0031	3867	1	0	0	0	0	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0032	3867	1	0	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0033	3867	1	0	0	0	1	0	copy fasta	PCARE	chr2	29056695	29079523