JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCARE_chr2_29056695_29079523	0/0	c0034	3870	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0035	3867	1	0	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0036	3867	1	0	0	0	0	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0037	3867	1	0	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0038	3867	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0039	3867	1	0	0	0	0	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0040	3867	1	0	0	1	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0041	3867	1	0	0	0	1	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0042	3870	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0043	3870	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0044	3870	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0045	3870	1	0	0	1	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0046	3867	1	0	0	0	0	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0047	3867	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0048	3870	1	0	0	1	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0049	3870	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0050	3867	1	0	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0051	3870	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0052	3867	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0053	3870	1	0	0	0	0	1	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0054	3867	1	0	1	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0055	3867	1	0	0	1	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0056	3870	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0057	3867	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCARE_chr2_29056695_29079523	0/0	c0058	3870	1	1	0	0	0	0	copy fasta	PCARE	chr2	29056695	29079523
PCBD1_chr10_70878510_70893565	1/1	c0001	315	446	97	77	202	18	50	copy fasta	PCBD1	chr10	70878510	70893565
PCBD1_chr10_70878510_70893565	0/0	c0002	315	1	0	1	0	0	0	copy fasta	PCBD1	chr10	70878510	70893565
PCBD1_chr10_70878510_70893565	0/0	c0003	315	1	1	0	0	0	0	copy fasta	PCBD1	chr10	70878510	70893565
PCBD2_chr5_134900131_134967644	1/1	c0001	393	330	82	62	136	14	34	copy fasta	PCBD2	chr5	134900131	134967644
PCBP1_chr2_70082477_70094203	1/1	c0001	1071	399	90	72	175	18	42	copy fasta	PCBP1	chr2	70082477	70094203
PCBP1_chr2_70082477_70094203	0/0	c0002	1071	3	1	2	0	0	0	copy fasta	PCBP1	chr2	70082477	70094203
PCBP1_chr2_70082477_70094203	0/0	c0003	1071	1	0	0	1	0	0	copy fasta	PCBP1	chr2	70082477	70094203
PCBP1_chr2_70082477_70094203	0/0	c0004	1071	1	1	0	0	0	0	copy fasta	PCBP1	chr2	70082477	70094203
PCBP2_chr12_53447102_53486162	1/1	c0001	1089	346	83	60	143	12	46	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	c0002	1089	1	1	0	0	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP2_chr12_53447102_53486162	0/0	c0003	1089	1	0	0	1	0	0	copy fasta	PCBP2	chr12	53447102	53486162
PCBP3_chr21_45638725_45947450	0/1	c0001	1116	261	77	46	92	8	37	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	1/0	c0002	1116	23	2	14	1	2	3	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	c0003	1116	3	3	0	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	c0004	1116	2	2	0	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	c0005	1116	1	0	0	1	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	c0006	1116	1	0	0	1	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	c0007	1116	1	0	0	1	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP4_chr3_51952458_51972454	1/1	c0001	1212	247	46	53	96	9	41	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	c0002	1212	35	15	3	15	0	2	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	c0003	1212	19	19	0	0	0	0	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	c0004	1212	6	0	0	6	0	0	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	c0005	1212	1	1	0	0	0	0	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	c0006	1212	1	1	0	0	0	0	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	c0007	1212	1	0	0	0	0	1	copy fasta	PCBP4	chr3	51952458	51972454