JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCBP4_chr3_51952458_51972454	0/0	c0008	1212	1	0	0	0	1	0	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	c0009	1212	1	0	0	1	0	0	copy fasta	PCBP4	chr3	51952458	51972454
PCCA_chr13_100084093_100535435	1/1	c0001	2187	146	44	31	38	6	25	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	c0002	2187	15	4	8	0	0	3	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	c0003	2187	6	6	0	0	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	c0004	2187	1	0	0	1	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	c0005	2187	1	1	0	0	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	c0006	2187	1	1	0	0	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	c0007	2187	1	1	0	0	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	c0008	2187	1	1	0	0	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	c0009	2187	1	0	1	0	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	c0010	2187	1	0	0	1	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCB_chr3_136245340_136335169	1/1	c0001	1620	290	84	56	105	9	34	copy fasta	PCCB	chr3	136245340	136335169
PCCB_chr3_136245340_136335169	0/0	c0002	1620	2	1	1	0	0	0	copy fasta	PCCB	chr3	136245340	136335169
PCCB_chr3_136245340_136335169	0/0	c0003	1620	2	2	0	0	0	0	copy fasta	PCCB	chr3	136245340	136335169
PCCB_chr3_136245340_136335169	0/0	c0004	1638	1	0	0	1	0	0	copy fasta	PCCB	chr3	136245340	136335169
PCCB_chr3_136245340_136335169	0/0	c0005	1620	1	1	0	0	0	0	copy fasta	PCCB	chr3	136245340	136335169
PCCB_chr3_136245340_136335169	0/0	c0006	1620	1	0	0	0	0	1	copy fasta	PCCB	chr3	136245340	136335169
PCCB_chr3_136245340_136335169	0/0	c0007	1620	1	0	1	0	0	0	copy fasta	PCCB	chr3	136245340	136335169
PCCB_chr3_136245340_136335169	0/0	c0008	1620	1	0	0	0	0	1	copy fasta	PCCB	chr3	136245340	136335169
PCCB_chr3_136245340_136335169	0/0	c0009	1620	1	0	0	0	1	0	copy fasta	PCCB	chr3	136245340	136335169
PCDH10_chr4_133144294_133199700	1/1	c0001	3123	319	77	71	127	10	32	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	c0002	3123	44	1	7	36	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	c0003	3123	8	6	1	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	c0004	3123	2	0	0	2	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	c0005	3123	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	c0006	3123	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	c0007	3123	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	c0008	3123	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	c0009	3123	1	0	1	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	c0010	3123	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	c0011	3123	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	c0012	3123	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	c0013	3123	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH11X_chrX_91774375_92628230	0/0	c0001	4044	133	35	24	51	5	18	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	c0002	4044	8	7	1	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	c0003	4044	3	3	0	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	c0004	4044	3	0	0	3	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	c0005	4044	2	0	0	2	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	c0006	4044	1	0	0	1	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	c0007	4044	1	0	0	1	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	c0008	4044	1	0	0	1	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	c0009	4044	1	1	0	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	c0010	4044	1	0	0	1	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11Y_chrY_4995296_5747224	0/0	c0001	3747	93	15	13	54	3	8	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	c0002	3747	16	0	7	0	2	7	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	c0003	3747	3	0	0	3	0	0	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	c0004	3747	1	1	0	0	0	0	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	c0005	3747	1	0	0	1	0	0	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	c0006	3747	1	1	0	0	0	0	copy fasta	PCDH11Y	chrY	4995296	5747224