JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDH12_chr5_141938581_141963202	0/1	c0001	3564	154	22	25	85	2	19	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0002	3564	63	1	7	45	2	8	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0003	3555	45	2	17	22	1	3	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0004	3555	32	30	2	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0005	3555	20	2	4	6	3	5	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0006	3555	17	0	5	3	4	5	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0007	3555	11	0	6	0	2	3	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0008	3555	9	9	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0009	3567	8	6	2	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0010	3564	4	1	2	0	0	1	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0011	3555	4	1	1	0	2	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0012	3555	4	4	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0013	3555	3	2	0	0	0	1	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0014	3564	3	2	1	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0015	3561	3	3	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0016	3564	2	0	0	2	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0017	3555	2	0	0	2	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0018	3555	2	2	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0019	3555	2	2	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	1/0	c0020	3555	2	0	1	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0021	3555	2	2	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0022	3564	2	0	0	2	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0023	3564	1	0	0	0	0	1	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0024	3564	1	0	0	0	1	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0025	3564	1	0	0	0	1	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0026	3555	1	0	0	0	0	1	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0027	3564	1	0	0	1	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0028	3564	1	0	1	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0029	3555	1	1	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0030	3564	1	0	0	1	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0031	3555	1	0	0	1	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0032	3555	1	0	1	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0033	3555	1	1	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0034	3555	1	1	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0035	3555	1	1	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0036	3564	1	1	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0037	3555	1	0	0	0	0	1	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0038	3555	1	0	1	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0039	3564	1	1	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	c0040	3555	1	1	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH15_chr10_53797771_54806231	1/0	c0001	5223	20	10	7	1	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0002	5223	13	10	2	1	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0003	5223	12	6	3	1	0	2	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0004	5223	8	2	2	2	0	2	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0005	5223	4	2	0	0	0	2	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0006	5223	4	2	0	1	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0007	5223	3	1	1	0	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0008	5223	2	0	2	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0009	5223	2	2	0	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/1	c0010	5223	2	0	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231